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To complete the naming simplification, what is currently the cellfinder cli tool (i.e. cellfinder & brainreg) should be renamed. This may also be good time to decide on how the cli tools should be used. I was thinking we could move towards a general brainglobe cli, perhaps defined in the metapackage, e.g.:
To download an atlas - brainglobe atlas_install allen_mouse_10um
To run the currentl cellfinder cli - brainglobe wholebrain input_data output_dir
Alternatively, we could just rename the current cli to something like brainglobe_wholebrain_cell and deprecate the current cellfinder cli.
The text was updated successfully, but these errors were encountered:
Currently brainmapper is the best name we can come up with. Rather than long, descriptive CLI names, we're thinking of coming up with the best snappy name we can for each one and make sure the docs are clear what they do
To complete the naming simplification, what is currently the cellfinder cli tool (i.e. cellfinder & brainreg) should be renamed. This may also be good time to decide on how the cli tools should be used. I was thinking we could move towards a general
brainglobe
cli, perhaps defined in the metapackage, e.g.:brainglobe atlas_install allen_mouse_10um
brainglobe wholebrain input_data output_dir
Alternatively, we could just rename the current cli to something like
brainglobe_wholebrain_cell
and deprecate the currentcellfinder
cli.The text was updated successfully, but these errors were encountered: