Various housekeeping

.github/workflows/test_and_deploy.yml

@@ -22,8 +22,6 @@ jobs:
           python-version: "3.10"
         - os: windows-latest
           python-version: "3.9"
-        - os: ubuntu-latest
-          python-version: "3.8"
 
     steps:
       - uses: neuroinformatics-unit/actions/test@v1

MANIFEST.in

@@ -1,3 +1,6 @@
 include LICENSE
 include README.md
 include requirements.txt
+
+exclude .codecov.yml
+prune tutorials

README.md

@@ -5,7 +5,7 @@
 [![Wheel](https://img.shields.io/pypi/wheel/bg-atlasapi.svg)](https://pypi.org/project/bg-atlasapi)
 [![Development Status](https://img.shields.io/pypi/status/brainatlas-api.svg)](https://github.com/SainsburyWellcomeCentre/brainatlas-api)
 [![Downloads](https://pepy.tech/badge/bg-atlasapi)](https://pepy.tech/project/bg-atlasapi)
-[![Tests](https://img.shields.io/github/workflow/status/brainglobe/bg-atlasapi/tests)](
+[![Tests](https://img.shields.io/github/actions/workflow/status/brainglobe/bg-atlasapi/test_and_deploy.yml?branch=main)](
     https://github.com/brainglobe/bg-atlasapi/actions)
 [![codecov](https://codecov.io/gh/brainglobe/bg-atlasapi/branch/master/graph/badge.svg?token=WTFPFW0TE4)](https://codecov.io/gh/brainglobe/bg-atlasapi)
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/python/black)

bg_atlasapi/__init__.py

@@ -1,5 +1,13 @@
-__author__ = """brainglobe"""
-__version__ = "1.0.2"
+from importlib.metadata import PackageNotFoundError, version
+
+try:
+    __version__ = version("bg-atlasapi")
+    del version
+except PackageNotFoundError:
+    # package is not installed
+    pass
+
+__author__ = "BrainGlobe Developers"
 
 
 from bg_atlasapi.bg_atlas import BrainGlobeAtlas

pyproject.toml

@@ -12,12 +12,11 @@ classifiers = [
     "Intended Audience :: Science/Research",
     "Operating System :: OS Independent",
     "Programming Language :: Python",
-    "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
-    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.9",
 ]
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 dependencies = [
     "bg-space >= 0.5.0",
     "click",
@@ -32,15 +31,14 @@ dependencies = [
 dynamic = ["version"]
 
 [project.urls]
-"Homepage" = "https://brainglobe.info/atlas-api"
+"Homepage" = "https://brainglobe.info/documentation/bg-atlasapi/index.html"
 "Source Code" = "https://github.com/brainglobe/bg-atlasapi"
 "Bug Tracker" = "https://github.com/brainglobe/bg-atlasapi/issues"
-"Documentation" = "https://docs.brainglobe.info/bg-atlasapi"
+"Documentation" = "https://brainglobe.info/documentation/bg-atlasapi/index.html"
 
 [project.optional-dependencies]
 dev = [
     "check-manifest",
-    "gitpython",
     "pre-commit",
     "pytest",
     "pytest-cov",
@@ -74,7 +72,7 @@ markers = [
 ]
 
 [tool.black]
-target-version = ['py38', 'py39', 'py310', 'py311']
+target-version = ['py39', 'py310', 'py311']
 skip-string-normalization = false
 line-length = 79
 
@@ -95,8 +93,20 @@ exclude = ["__init__.py","build",".eggs"]
 select = ["I", "E", "F"]
 fix = true
 
-[tool.cibuildwheel]
-build = "cp38-* cp39-* cp310-* cp311-*"
+[tool.tox]
+legacy_tox_ini = """
+# For more information about tox, see https://tox.readthedocs.io/en/latest/
+[tox]
+envlist = py{38,39,310,311}
+
+[gh-actions]
+python =
+    3.9: py39
+    3.10: py310
+    3.11: py311
 
-[tool.cibuildwheel.macos]
-archs = ["x86_64", "arm64"]
+[testenv]
+extras =
+    dev
+commands = pytest -v --color=yes --cov=bg_atlasapi --cov-report=xml
+"""