tests

Add cavefish atlas 🐟 #351

	name: tests

	on:
	push:
	branches:
	- "main"
	tags:
	- "v**"
	pull_request:
	workflow_dispatch:

	jobs:
	linting:
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/lint@v2

	manifest:
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/check_manifest@v2

	test:
	needs: [linting, manifest]
	name: ${{ matrix.os }} py${{ matrix.python-version }}
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	# Run across a mixture of Python versions and operating systems
	include:
	- os: ubuntu-latest
	python-version: "3.11"
	- os: macos-13 # Intel Mac
	python-version: "3.11"
	- os: macos-latest # ARM Mac
	python-version: "3.10"
	- os: windows-latest
	python-version: "3.9"

	steps:
	- name: Cache atlases
	uses: actions/cache@v3
	with:
	path: \| # ensure we don't cache any interrupted atlas download and extraction, if e.g. we cancel the workflow manually
	~/.brainglobe
	!~/.brainglobe/atlas.tar.gz
	key: brainglobe

	- uses: neuroinformatics-unit/actions/test@v2
	with:
	python-version: ${{ matrix.python-version }}
	secret-codecov-token: ${{ secrets.CODECOV_TOKEN }}

	build_sdist_wheels:
	name: Build source distribution and wheel
	needs: [test]
	if: github.event_name == 'push' && github.ref_type == 'tag'
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/build_sdist_wheels@v2

	upload_all:
	name: Publish build distributions
	needs: [build_sdist_wheels]
	if: github.event_name == 'push' && github.ref_type == 'tag'
	runs-on: ubuntu-latest
	steps:
	- uses: neuroinformatics-unit/actions/upload_pypi@v2
	with:
	secret-pypi-key: ${{ secrets.TWINE_API_KEY }}

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