Original implementation by Brian Bushnell (2014): http://seqanswers.com/forums/showthread.php?t=42776
The following tools are compared:
The comparison adds fake truseq adapters, "gruseq", provided by Brian Bushnell, downloaded from: http://seqanswers.com/forums/attachment.php?attachmentid=2993&d=1398383571
A single sample is downloaded from SRA. Feel free to replace it with whatever you want.
These plots are produced by the workflow, one for benchmarking results (Snakemake runs each tool three times to assess runtime, CPU and RAM usage), and one plot with adapter removal performance.
Run the benchmarking workflow with something like:
snakemake --use-conda --jobs 10