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bluenote-1577 committed Oct 13, 2024
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> [!NOTE]
> As of 2024-10-12, conda install is not ready yet. Will be available in the next few days.
#### Conda (preferred)

```sh
mamba install -c bioconda devider
devider -h
```

See the [installation instructions on the wiki](https://github.com/bluenote-1577/devider/wiki/Installation) if you want want a static binary or you're **not** on x86-64 CPUs.
#### Static binary (only x86_64 architectures)

```sh
wget https://github.com/bluenote-1577/devider/releases/download/latest/devider
chmod +x devider
./devider
```

See the [installation instructions on the wiki](https://github.com/bluenote-1577/devider/wiki/Installation) if you want want to compile devider (written in Rust) or you're **not** on x86-64 CPUs.

## Quick Start after install

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>./devider/scripts/run_devider_pipeline -i reads.fq.gz -r reference.fa -o pipeline_output
>```
## Manuals, tutorials, and cookbook
### How to use devider
## How to use devider
* [Cookbook](https://github.com/bluenote-1577/devider/wiki/Cookbook) - see here for usage examples.
* [Advanced usage manual](https://github.com/bluenote-1577/devider/wiki/Advanced-usage-manual) - see here for more detailed information about parameters and usage.
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