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  1. awesome-single-cell awesome-single-cell Public

    Forked from seandavi/awesome-single-cell

    Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  2. deeplearning-biology deeplearning-biology Public

    Forked from hussius/deeplearning-biology

    A list of deep learning implementations in biology

    1 1

  3. leafcutter leafcutter Public

    Forked from davidaknowles/leafcutter

    Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

    R

  4. polygenic-risk-scores polygenic-risk-scores Public

    Forked from pgormley/polygenic-risk-scores

    Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.

    Shell 1

  5. Prepare a table annotations for huma... Prepare a table annotations for human genes using Bioconductor
    1
    # I am sure this can be done in a multiple of ways: but here's a nice example of use of Reduce for merging lists 
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    # This particular use case if when you are trying to make a look up table for Human genes
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    # Check out Marc Carlson's Annotationdbi packages and tutorials for alternative ways (SQL) of retrieving the information 
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    # Caution note:
    5
    # the unintended consequence of joining on the Entrez Gene ids is the Ensembl ids for alternative ids are lost and usually the 
  6. Convert+xgmml+file+to+igraph+object.... Convert+xgmml+file+to+igraph+object.ipynb
    1
    {
    2
     "cells": [
    3
      {
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       "cell_type": "markdown",
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       "metadata": {},