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adjust public WPS outputs sub-dir for weaver #401

Merged
merged 4 commits into from
Nov 10, 2023
Merged

adjust public WPS outputs sub-dir for weaver #401

merged 4 commits into from
Nov 10, 2023

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fmigneault
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@fmigneault fmigneault commented Nov 9, 2023 •
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Overview

Adjust public WPS outputs sub-dir for Weaver and Cowbird to align.

Changes

Non-breaking changes

  • Fix weaver and cowbird inconsistencies for public WPS outputs directory handling.

    Because cowbird needs to mount multiple directories within the user-workspace for jupyterhub, it needs to define
    a dedicated public/wps_outputs sub-directory to distinguish it from other public files not part of WPS outputs.
    However, for WPS birds, other files than WPS outputs are irrelevant, and are therefore mounted directly in their
    container. The variable PUBLIC_WORKSPACE_WPS_OUTPUTS_SUBDIR was being misused in the context of weaver,
    causing WPS output URLs for public context to be nested as /wpsoutputs/weaver/public/wps_outputs/{jobID}
    instead of the intended location /wpsoutputs/weaver/public/{jobID}, in contrast to user-context WPS outputs
    located under /wpsoutputs/weaver/users/{userID}/{jobID}.

Breaking changes

  • n/a

Related Issue / Discussion

birdhouse_daccs_configs_branch: master
birdhouse_skip_ci: false

@fmigneault fmigneault self-assigned this Nov 9, 2023
@github-actions github-actions bot added component/cowbird Related to https://github.com/Ouranosinc/cowbird documentation Improvements or additions to documentation labels Nov 9, 2023
@github-actions github-actions bot added the component/jupyterhub Related to JupyterHub as development frontend with notebooks label Nov 9, 2023
mishaschwartz
mishaschwartz approved these changes Nov 9, 2023
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Looks good to me, pending adding the variable to EXTRA_VARS

birdhouse/components/cowbird/default.env Show resolved Hide resolved
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/2224/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-weaver-public-wps-outputs
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1405/

NOTEBOOK TEST RESULTS 
    
[2023-11-09T20:15:13.295Z] ============================= test session starts ==============================
[2023-11-09T20:15:13.295Z] platform linux -- Python 3.9.16, pytest-7.3.1, pluggy-1.0.0
[2023-11-09T20:15:13.295Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-11-09T20:15:13.295Z] plugins: anyio-3.6.1, dash-2.10.0, nbval-0.9.6, tornasync-0.6.0.post2, xdist-3.3.1
[2023-11-09T20:15:13.295Z] collected 255 items
[2023-11-09T20:15:13.295Z] 
[2023-11-09T20:15:23.541Z] notebooks-auth/geoserver.ipynb ..................                        [  7%]
[2023-11-09T20:15:31.369Z] notebooks-auth/test_thredds.ipynb ...........                            [ 11%]
[2023-11-09T20:15:42.329Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [ 14%]
[2023-11-09T20:15:54.542Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 16%]
[2023-11-09T20:16:03.251Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 19%]
[2023-11-09T20:23:38.600Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 24%]
[2023-11-09T20:23:39.539Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 24%]
[2023-11-09T20:23:47.890Z] ...............                                                          [ 30%]
[2023-11-09T20:23:57.423Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 32%]
[2023-11-09T20:24:04.344Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 34%]
[2023-11-09T20:24:21.122Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 37%]
[2023-11-09T20:24:22.509Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 37%]
[2023-11-09T20:24:30.621Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 40%]
[2023-11-09T20:24:35.104Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 42%]
[2023-11-09T20:27:36.309Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 48%]
[2023-11-09T20:28:54.866Z] .............                                                            [ 53%]
[2023-11-09T20:28:56.254Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 54%]
[2023-11-09T20:28:58.208Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 58%]
[2023-11-09T20:29:15.424Z] .................                                                        [ 64%]
[2023-11-09T20:29:23.139Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb ......          [ 67%]
[2023-11-09T20:29:24.523Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 67%]
[2023-11-09T20:29:42.334Z] ........F                                                                [ 70%]
[2023-11-09T20:29:51.851Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 75%]
[2023-11-09T20:30:00.846Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 77%]
[2023-11-09T20:30:02.234Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 78%]
[2023-11-09T20:30:06.065Z] ......                                                                   [ 80%]
[2023-11-09T20:30:14.207Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2023-11-09T20:30:29.084Z] .............                                                            [ 85%]
[2023-11-09T20:30:39.089Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2023-11-09T20:31:15.658Z] ....s.                                                                   [ 88%]
[2023-11-09T20:31:23.802Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2023-11-09T20:31:37.108Z] ...                                                                      [ 90%]
[2023-11-09T20:31:52.018Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2023-11-09T20:32:15.898Z] ......                                                                   [ 92%]
[2023-11-09T20:32:18.495Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2023-11-09T20:34:52.934Z] notebooks/stress-tests.ipynb ......                                      [100%]
[2023-11-09T20:34:52.934Z] 
[2023-11-09T20:34:52.934Z] =================================== FAILURES ===================================

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/2225/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-weaver-public-wps-outputs
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-20.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1406/

NOTEBOOK TEST RESULTS 
    
[2023-11-09T20:37:58.358Z] ============================= test session starts ==============================
[2023-11-09T20:37:58.358Z] platform linux -- Python 3.9.16, pytest-7.3.1, pluggy-1.0.0
[2023-11-09T20:37:58.358Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-11-09T20:37:58.358Z] plugins: anyio-3.6.1, dash-2.10.0, nbval-0.9.6, tornasync-0.6.0.post2, xdist-3.3.1
[2023-11-09T20:37:58.358Z] collected 255 items
[2023-11-09T20:37:58.358Z] 
[2023-11-09T20:38:09.615Z] notebooks-auth/geoserver.ipynb ..................                        [  7%]
[2023-11-09T20:38:17.545Z] notebooks-auth/test_thredds.ipynb ...........                            [ 11%]
[2023-11-09T20:38:25.597Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [ 14%]
[2023-11-09T20:38:35.965Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 16%]
[2023-11-09T20:38:42.243Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 19%]
[2023-11-09T20:46:02.926Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 24%]
[2023-11-09T20:46:07.130Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 24%]
[2023-11-09T20:46:48.807Z] ...............                                                          [ 30%]
[2023-11-09T20:46:59.718Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 32%]
[2023-11-09T20:47:10.364Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 34%]
[2023-11-09T20:47:32.212Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 37%]
[2023-11-09T20:47:33.858Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 37%]
[2023-11-09T20:48:02.567Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 40%]
[2023-11-09T20:48:08.020Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 42%]
[2023-11-09T20:51:08.884Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 48%]
[2023-11-09T20:52:46.638Z] .............                                                            [ 53%]
[2023-11-09T20:52:51.103Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 54%]
[2023-11-09T20:52:53.854Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 58%]
[2023-11-09T20:53:11.190Z] .................                                                        [ 64%]
[2023-11-09T20:53:19.784Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb ......          [ 67%]
[2023-11-09T20:53:21.171Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 67%]
[2023-11-09T20:53:54.368Z] ........F                                                                [ 70%]
[2023-11-09T20:54:04.759Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 75%]
[2023-11-09T20:54:14.074Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 77%]
[2023-11-09T20:54:15.457Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 78%]
[2023-11-09T20:54:18.261Z] ......                                                                   [ 80%]
[2023-11-09T20:54:26.398Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2023-11-09T20:54:40.611Z] .............                                                            [ 85%]
[2023-11-09T20:54:50.616Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2023-11-09T20:55:27.178Z] ....s.                                                                   [ 88%]
[2023-11-09T20:55:35.314Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2023-11-09T20:55:50.870Z] ...                                                                      [ 90%]
[2023-11-09T20:56:05.791Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2023-11-09T20:56:30.681Z] ......                                                                   [ 92%]
[2023-11-09T20:56:33.169Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2023-11-09T20:59:12.812Z] notebooks/stress-tests.ipynb ......                                      [100%]
[2023-11-09T20:59:12.812Z] 
[2023-11-09T20:59:12.812Z] =================================== FAILURES ===================================

@crim-jenkins-bot
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/2227/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-weaver-public-wps-outputs
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1408/

NOTEBOOK TEST RESULTS 
    
[2023-11-09T21:17:44.956Z] ============================= test session starts ==============================
[2023-11-09T21:17:44.956Z] platform linux -- Python 3.9.16, pytest-7.3.1, pluggy-1.0.0
[2023-11-09T21:17:44.956Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-11-09T21:17:44.957Z] plugins: anyio-3.6.1, dash-2.10.0, nbval-0.9.6, tornasync-0.6.0.post2, xdist-3.3.1
[2023-11-09T21:17:44.957Z] collected 255 items
[2023-11-09T21:17:44.957Z] 
[2023-11-09T21:17:56.192Z] notebooks-auth/geoserver.ipynb ..................                        [  7%]
[2023-11-09T21:18:04.062Z] notebooks-auth/test_thredds.ipynb ...........                            [ 11%]
[2023-11-09T21:18:12.657Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [ 14%]
[2023-11-09T21:18:22.744Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 16%]
[2023-11-09T21:18:28.089Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb .FFFFFFF       [ 19%]
[2023-11-09T21:25:46.049Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb ............        [ 24%]
[2023-11-09T21:25:46.049Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-climate-stations.ipynb . [ 24%]
[2023-11-09T21:25:52.596Z] ...............                                                          [ 30%]
[2023-11-09T21:26:01.998Z] pavics-sdi-master/docs/source/notebooks/eccc-geoapi-xclim.ipynb .....    [ 32%]
[2023-11-09T21:26:08.901Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb ......            [ 34%]
[2023-11-09T21:26:25.282Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 37%]
[2023-11-09T21:26:26.663Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 37%]
[2023-11-09T21:26:33.542Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 40%]
[2023-11-09T21:26:38.047Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 42%]
[2023-11-09T21:29:34.454Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 48%]
[2023-11-09T21:30:49.524Z] .............                                                            [ 53%]
[2023-11-09T21:30:51.704Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 54%]
[2023-11-09T21:30:54.502Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 58%]
[2023-11-09T21:31:11.819Z] .................                                                        [ 64%]
[2023-11-09T21:31:18.816Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb ......          [ 67%]
[2023-11-09T21:31:20.726Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 67%]
[2023-11-09T21:31:38.772Z] ........F                                                                [ 70%]
[2023-11-09T21:31:47.556Z] finch-master/docs/source/notebooks/dap_subset.ipynb ...........          [ 75%]
[2023-11-09T21:31:57.285Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 77%]
[2023-11-09T21:31:58.674Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 78%]
[2023-11-09T21:32:01.486Z] ......                                                                   [ 80%]
[2023-11-09T21:32:08.076Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2023-11-09T21:32:23.108Z] .............                                                            [ 85%]
[2023-11-09T21:32:33.100Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2023-11-09T21:33:08.661Z] ....s.                                                                   [ 88%]
[2023-11-09T21:33:16.812Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2023-11-09T21:33:32.355Z] ...                                                                      [ 90%]
[2023-11-09T21:33:44.603Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2023-11-09T21:34:08.507Z] ......                                                                   [ 92%]
[2023-11-09T21:34:09.859Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2023-11-09T21:36:49.699Z] notebooks/stress-tests.ipynb ......                                      [100%]
[2023-11-09T21:36:49.699Z] 
[2023-11-09T21:36:49.699Z] =================================== FAILURES ===================================

@fmigneault
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Running http://daccs-jenkins.crim.ca/job/DACCS-iac-birdhouse/2229/ with combined https://github.com/bird-house/birdhouse-deploy/tree/fix-weaver-public-wps-outputs and https://github.com/Ouranosinc/pavics-sdi/tree/fix-weaver-nested-output-id.

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/2229/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-weaver-public-wps-outputs
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : fix-weaver-nested-output-id

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-20.rdext.crim.ca

Infrastructure deployment failed. Instance has not been destroyed. @matprov

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/2231/
Result : success

BIRDHOUSE_DEPLOY_BRANCH : fix-weaver-public-wps-outputs
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : fix-weaver-nested-output-id

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/1410/

NOTEBOOK TEST RESULTS 
    
[2023-11-10T19:23:43.245Z] ============================= test session starts ==============================
[2023-11-10T19:23:43.245Z] platform linux -- Python 3.9.16, pytest-7.3.1, pluggy-1.0.0
[2023-11-10T19:23:43.245Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2023-11-10T19:23:43.245Z] plugins: anyio-3.6.1, dash-2.10.0, nbval-0.9.6, tornasync-0.6.0.post2, xdist-3.3.1
[2023-11-10T19:23:43.245Z] collected 255 items
[2023-11-10T19:23:43.245Z] 
[2023-11-10T19:23:54.552Z] notebooks-auth/geoserver.ipynb ..................                        [  7%]
[2023-11-10T19:24:02.513Z] notebooks-auth/test_thredds.ipynb ...........                            [ 11%]
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[2023-11-10T19:44:32.054Z] ================= 254 passed, 1 skipped in 1248.62s (0:20:48) ==================

@github-actions github-actions bot added the ci/operations Continuous Integration components label Nov 10, 2023
@fmigneault fmigneault merged commit 348ee89 into master Nov 10, 2023
3 of 5 checks passed
@fmigneault fmigneault deleted the fix-weaver-public-wps-outputs branch November 10, 2023 20:17
@tlvu tlvu mentioned this pull request Feb 17, 2024
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@ChaamC ChaamC ChaamC approved these changes

@mishaschwartz mishaschwartz mishaschwartz approved these changes

@tlvu tlvu Awaiting requested review from tlvu tlvu is a code owner

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@fmigneault fmigneault

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ci/operations Continuous Integration components component/cowbird Related to https://github.com/Ouranosinc/cowbird component/jupyterhub Related to JupyterHub as development frontend with notebooks documentation Improvements or additions to documentation
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