fixup! Migrate tutorials

biotite-dev · May 15, 2024 · 4b08f11 · 4b08f11
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diff --git a/doc/tutorial/sequence/align_heuristic.rst b/doc/tutorial/sequence/align_heuristic.rst
@@ -63,7 +63,7 @@ The *k-mers* of a sequence are all subsequences with length *k*
     import biotite.sequence.align as align
 
     # We want to list all 3-mers
-    kmer_alph = align.KmerAlphabet(base_alpahbet=query.alphabet, k=3)
+    kmer_alph = align.KmerAlphabet(base_alphabet=query.alphabet, k=3)
     k_mers = kmer_alph.decode_multiple(kmer_alph.create_kmers(query))
     print(kmers)
 

diff --git a/doc/tutorial/sequence/align_optimal.rst b/doc/tutorial/sequence/align_optimal.rst
@@ -167,6 +167,6 @@ using :func:`get_alignment()`, where the score is not provided.
     print(fasta_file)
     fasta_file.write(temp_file.name)
 
-    fasta_file = FastaFile.read(temp_file)
-    alignment = sequence.get_alignment(fasta_file)
+    fasta_file = fasta.FastaFile.read(temp_file.name)
+    alignment = fasta.get_alignment(fasta_file)
     alignment.score = align.score(alignment, matrix=matrix)