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biothings · Sep 20, 2023 · a77dfae · a77dfae
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diff --git a/src/hub/dataload/sources/dbnsfp/dbnsfp_parser.py b/src/hub/dataload/sources/dbnsfp/dbnsfp_parser.py
@@ -354,7 +354,7 @@ def split_dedup(values: list, sep: str, na_values: set = NA_VALUES):
     Column("Aloft_prob_Dominant", dest="aloft.prob_dominant", transform=split_str),
     Column("Aloft_pred", transform=split_str),
     Column("Aloft_Confidence", transform=split_str),
-    Column("CADD_raw", dest="cadd.raw_score", transform=split_float, assembly="hg38"),  # TODO CADD will have hg38 next update
+    Column("CADD_raw", dest="cadd.raw_score", transform=split_float, assembly="hg38"),  # TODO CADD will have hg38 next update. Deprecate these 3 field then.
     Column("CADD_raw_rankscore", dest="cadd.raw_rankscore", transform=split_float, assembly="hg38"),
     Column("CADD_phred", transform=split_float, assembly="hg38"),  # CADD phred-like scores, not as other predications of string type
     # Column("CADD_raw_hg19", assembly="hg19"),  # discarded because Myvariant.info already has a hg19-only datasource of CADD.

diff --git a/src/hub/dataload/sources/dbnsfp/dbnsfp_parser_43a.py b/src/hub/dataload/sources/dbnsfp/dbnsfp_parser_43a.py
@@ -12,7 +12,7 @@
 
 
 """
-This parser is for dbNSFP v4.3a downloaded from https://sites.google.com/site/jpopgen/dbNSFP
+Deprecated. This parser is for dbNSFP v4.3a downloaded from https://sites.google.com/site/jpopgen/dbNSFP
 """
-Original file line number
+Diff line change
@@ Expand Up / @@ -12,7 +12,7 @@ @@
     """
-    This parser is for dbNSFP v4.3a downloaded from https://sites.google.com/site/jpopgen/dbNSFP
+    Deprecated. This parser is for dbNSFP v4.3a downloaded from https://sites.google.com/site/jpopgen/dbNSFP
     """
@@ Expand Down @@