Remove items called node and edges.

src/hub/dataload/sources/civic/civic_parser.py

@@ -1,11 +1,8 @@
-import requests
 import json
-import time
 import glob
 import os
 import logging
-from utils.hgvs import get_hgvs_from_vcf
-from biothings.utils.dataload import unlist, dict_sweep, to_int
+from biothings.utils.dataload import unlist, dict_sweep
 
 
 def merge_dicts(d1, d2):
@@ -33,6 +30,8 @@ def remove_nodes_and_edges(obj):
     if 'edges' in obj:
         return [remove_nodes_and_edges(edge['node']) for edge in obj['edges']]
 
+    if 'nodes' in obj:
+        return [remove_nodes_and_edges(node) for node in obj['nodes']]
     return {
         key: remove_nodes_and_edges(value)
         for key, value in obj.items()
@@ -88,7 +87,6 @@ def load_data(data_folder):
             new_doc["civic"].pop("myVariantInfo")
         new_doc = remove_nodes_and_edges(new_doc)
         new_doc["civic"]["molecularProfiles"] = new_doc["civic"]["molecularProfiles"]["nodes"]
-        new_doc["civic"]["v"] = "1.0"
         yield dict_sweep(unlist(new_doc), ['', 'null', 'N/A', None, [], {}])
 
     logging.info("number of ids with ref, alt, chrom: {}".format(no_case1))