Added link to bioRxiv puplication #144
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name: Test package | |
# This is a basic action to run the package's tests. | |
# it caches the CmdStan installation between runs. | |
on: | |
push: | |
branches: | |
- 'main' | |
tags: | |
- '**' | |
pull_request: | |
workflow_dispatch: {} | |
env: | |
CMDSTAN_VERSION: "2.33.0" | |
jobs: | |
sk-stan-learn: | |
name: tests | |
runs-on: ${{matrix.os}} | |
strategy: | |
matrix: | |
os: [ubuntu-latest] # , macos-latest, windows-latest | |
python-version: ["3.10", "3.11"] # 3.7, 3.8, 3.9, | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Check out github | |
uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install cmdstanpy | |
run: | | |
python -m pip install --upgrade pip wheel | |
pip install "cmdstanpy==1.1.0" | |
- name: CmdStan installation cacheing | |
uses: actions/cache@v2 | |
with: | |
path: ~/.cmdstan | |
key: ${{ runner.os }}-cmdstan-${{ env.CMDSTAN_VERSION }} | |
- name: Install CmdStan (Linux, macOS) | |
if: matrix.os != 'windows-latest' | |
run: | | |
python -m cmdstanpy.install_cmdstan --version "${{ env.CMDSTAN_VERSION }}" --cores 2 | |
- name: Install CmdStan (Windows) | |
if: matrix.os == 'windows-latest' | |
run: | | |
python -m cmdstanpy.install_cmdstan --compiler --version "${{ env.CMDSTAN_VERSION }}" --cores 2 | |
- name: Install package | |
run: | | |
pip install .[development] | |
pip install .[error_propagation] | |
- name: Run tests | |
run: | | |
pytest -v ./tests | |