Generate SSSOM for ICD11 to ICD11 codes

[cthoyt]

cc @matentzn

now, the ICD11 OBO output looks like:

format-version: 1.4
auto-generated-by: PyOBO v0.12.0-dev-86e8399e on 2025-01-09T17:15:55.878453
idspace: dcterms http://purl.org/dc/terms/ "Dublin Core Metadata Initiative Terms"
idspace: skos http://www.w3.org/2004/02/skos/core# "Simple Knowledge Organization System"
ontology: icd11
property_value: dcterms:title "International Classification of Diseases\, 11th Revision" xsd:string
property_value: dcterms:license "CC-BY-ND-3.0-IGO" xsd:string
property_value: dcterms:description "Diagnostic tool for epidemiology\\\, health management and clinical purposes\\\, maintained by the World Health Organization \\\(WHO\\\). It provides a system of diagnostic codes for classifying diseases\\\, including nuanced classifications of a wide variety of signs\\\, symptoms\\\, abnormal findings\\\, complaints\\\, social circumstances\\\, and external causes of injury or disease." xsd:string

[Typedef]
id: icd_mms_code
is_metadata_tag: true

[Term]
id: icd11:1000004774
name: Congenital coxa valga
def: "A condition caused by failure of the hip joint to correctly develop during the antenatal period. This condition is characterised by an increase in the femoral neck-shaft angle." []
xref: icd11.code:LB74.4
is_a: icd11:1387302440

...

Here's the SSSOM file corresponding to this demonstration (with the full list), generated from pyobo lookup mappings icd11

[matentzn]

This is super coooooool! Thank you! if this is public this will be very valuable for us!

[matentzn]

Due to the fact that in practice, you will be more likely to encounter the diagnostic codes, I would rather icd11 is synonym for icd11.code, not icd11.foundation, as described in the issue.

[cthoyt]

@matentzn SSSOM file with skos:exactMatches now at https://w3id.org/biopragmatics/resources/icd11/icd11.sssom.tsv. You can see https://github.com/biopragmatics/obo-db-ingest/tree/main/export/icd11#readme

[matentzn]

Awesome!

Even if I disagree with the choice of prefix for the foundation code! :D Thanks! This will be very useful to us!