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Curate new publications in Bioregistry #1299

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Curate new publications in Bioregistry #1299

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33 changes: 33 additions & 0 deletions src/bioregistry/data/bioregistry.json
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Original file line number Diff line number Diff line change
Expand Up @@ -20573,6 +20573,21 @@
],
"name": "COlleCtion of Open Natural ProdUcTs",
"pattern": "^CNP\\d{7}(\\.\\d+)?$",
"publications": [
{
"doi": "10.1093/nar/gkae1063",
"pubmed": "39588778",
"title": "COCONUT 2.0: a comprehensive overhaul and curation of the collection of open natural products database",
"year": 2024
},
{
"doi": "10.1186/s13321-020-00478-9",
"pmc": "PMC7798278",
"pubmed": "33423696",
"title": "COCONUT online: Collection of Open Natural Products database",
"year": 2021
}
],
"reviewer": {
"email": "[email protected]",
"github": "cthoyt",
Expand Down Expand Up @@ -42727,6 +42742,12 @@
"uri_format": "http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=$1"
},
"publications": [
{
"doi": "10.1093/nar/gkae1114",
"pubmed": "39558184",
"title": "GenBank 2025 update",
"year": 2024
},
{
"doi": "10.1093/nar/gkz956",
"pmc": "PMC7145611",
Expand Down Expand Up @@ -47234,6 +47255,12 @@
"uri_format": "http://www.gpcr.org/7tm/proteins/$1"
},
"publications": [
{
"doi": "10.1093/nar/gkae1065",
"pubmed": "39558158",
"title": "GPCRdb in 2025: adding odorant receptors, data mapper, structure similarity search and models of physiological ligand complexes",
"year": 2024
},
{
"doi": "10.1093/nar/gkaa1080",
"pmc": "PMC7778909",
Expand Down Expand Up @@ -98301,6 +98328,12 @@
"prefix": "RFAM"
},
"publications": [
{
"doi": "10.1093/nar/gkae1023",
"pubmed": "39526405",
"title": "Rfam 15: RNA families database in 2025",
"year": 2024
},
{
"doi": "10.1093/nar/gkx1038",
"pmc": "PMC5753348",
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4 changes: 4 additions & 0 deletions src/bioregistry/data/curated_papers.tsv
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Expand Up @@ -79,12 +79,16 @@ pubmed relevant orcid date_curated relevancy_type pr_added notes
39526195 0 0009-0009-5240-7463 2024-12-05 irrelevant_other 1296
39526373 1 0009-0009-5240-7463 2024-12-04 new_publication 1296 This is a publication for ncbi generally, does not fit well into any existing prefix
39526381 1 0009-0009-5240-7463 2024-12-01 new_publication 1290 Publication for refseq
39526405 1 0009-0009-5240-7463 2024-12-09 new_publication 1299 Publication for rfam
39535874 1 0009-0009-5240-7463 2024-12-05 not_notable 1296 This database website is very low quality and fails to resolve many of its own IDs
39540856 0 0009-0009-5240-7463 2024-12-05 no_website 1296
39546404 0 0009-0009-5240-7463 2024-12-05 not_identifiers_resource 1296
39552041 1 0009-0009-5240-7463 2024-12-01 new_publication 1292 Publication for UniProt
39558158 1 0009-0009-5240-7463 2024-12-09 new_publication 1299 Publication for gpcrdb
39558184 1 0009-0009-5240-7463 2024-12-09 new_publication 1299 Publication for genbank
39565202 1 0009-0009-5240-7463 2024-12-05 new_publication 1292 Publication for InterPro
39574417 1 0009-0009-5240-7463 2024-12-05 new_publication 1292 Publication for BindingDB
39576581 1 0009-0009-5240-7463 2024-12-06 new_provider 1297 This resource is a provider for UniProt IDs
39588755 1 0009-0009-5240-7463 2024-12-06 new_prefix 1295 Identifiers for microbially derived natural products
39588778 1 0009-0009-5240-7463 2024-12-10 new_publication 1299 Publication for coconut
39607847 0 0009-0009-5240-7463 2024-12-03 irrelevant_other 1296
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