Manual update and resolution of BioDeep issue (#1200)

docs/_data/curation.yml

@@ -2,6 +2,9 @@ example:
 - homepage: https://bams1.org
   name: Brain Architecture Knowledge Management System Neuroanatomical Ontology
   prefix: bams
+- homepage: null
+  name: null
+  prefix: biodeep
 - homepage: http://www.ebi.ac.uk/Rebholz-srv/GRO/GRO.html
   name: Gene Regulation Ontology
   prefix: bootstrep
@@ -32,6 +35,9 @@ example:
 - homepage: http://www.mesquiteproject.org/ontology/Habronattus/index.html
   name: Habronattus courtship
   prefix: habronattus
+- homepage: null
+  name: null
+  prefix: icechem
 - homepage: https://www.goreni.org/gr3_nomenclature.php
   name: The International Harmonization of Nomenclature and Diagnostic criteria
   prefix: inhand
@@ -44,6 +50,9 @@ example:
 - homepage: http://www.mesquiteproject.org/ontology/Loggerhead/index.html
   name: Loggerhead nesting
   prefix: loggerhead
+- homepage: null
+  name: null
+  prefix: lw
 - homepage: null
   name: Minimal Information About Anatomy ontology
   prefix: miaa
@@ -129,6 +138,9 @@ formatter:
 - homepage: https://biological-expression-language.github.io/
   name: Biological Expression Language
   prefix: bel
+- homepage: null
+  name: null
+  prefix: biodeep
 - homepage: https://www.ada.org/publications/CDT
   name: Current Dental Terminology
   prefix: cdt
@@ -213,6 +225,9 @@ formatter:
 - homepage: https://openlhs.github.io/HOSO/
   name: Healthcare Organizations and Services Ontology
   prefix: hoso
+- homepage: null
+  name: null
+  prefix: icechem
 - homepage: http://www.iana.org/assignments/language-subtag-registry/language-subtag-registry
   name: Internet Engineering Task Force Language Tag
   prefix: ietf.language
@@ -252,6 +267,9 @@ formatter:
 - homepage: https://lncipedia.org
   name: LNCipedia
   prefix: lncipedia
+- homepage: null
+  name: null
+  prefix: lw
 - homepage: null
   name: Minimal Information About Anatomy ontology
   prefix: miaa
@@ -451,6 +469,9 @@ pattern:
 - homepage: http://bind.ca
   name: BIND accession number
   prefix: bind
+- homepage: null
+  name: null
+  prefix: biodeep
 - homepage: http://www.bmrb.wisc.edu/
   name: BioMagResBank
   prefix: biomagresbank
@@ -831,6 +852,9 @@ pattern:
   name: International Classification of Diseases, 10th Revision, Procedure Coding
     System
   prefix: icd10pcs
+- homepage: null
+  name: null
+  prefix: icechem
 - homepage: https://entomology.ca.uky.edu/aginsectcellsdatabase
   name: Insect Cell Line Database
   prefix: icldb
@@ -927,6 +951,9 @@ pattern:
 - homepage: http://www.weizmann.ac.il/molgen/loqate/
   name: The localization and quantitation atlas of the yeast proteome
   prefix: loqate
+- homepage: null
+  name: null
+  prefix: lw
 - homepage: http://mampol.uab.es
   name: Mammalia Polymorphism Database
   prefix: mampol
@@ -1661,6 +1688,9 @@ wikidata:
 - homepage: http://biocyc.org
   name: BioCyc collection of metabolic pathway databases
   prefix: biocyc
+- homepage: null
+  name: null
+  prefix: biodeep
 - homepage: https://biofactoid.org/
   name: Biofactoid
   prefix: biofactoid
@@ -3647,6 +3677,9 @@ wikidata:
 - homepage: https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_IME.php?type=alpha&alpha=100
   name: ICEberg integrative and mobilizable element
   prefix: iceberg.ime
+- homepage: null
+  name: null
+  prefix: icechem
 - homepage: https://github.com/ontoice/ICEO
   name: Integrative and Conjugative Element Ontology
   prefix: iceo
@@ -4103,6 +4136,9 @@ wikidata:
 - homepage: https://vocab.lternet.edu/vocab/vocab/index.php
   name: Long Term Ecological Research Controlled Vocabulary
   prefix: lter
+- homepage: null
+  name: null
+  prefix: lw
 - homepage: https://w3id.org/nfdi4ing/metadata4ing/
   name: Metadata4Ing
   prefix: m4i
@@ -4545,11 +4581,14 @@ wikidata:
   name: NCBI Data Repository Service
   prefix: ncbidrs
 - homepage: https://www.ncbi.nlm.nih.gov/gene
-  name: Entrez Gene
+  name: NCBI Gene
   prefix: ncbigene
 - homepage: https://www.ncbi.nlm.nih.gov/genbank/sequenceids/
   name: GenInfo Identifier
   prefix: ncbigi
+- homepage: https://www.ncbi.nlm.nih.gov/gene/
+  name: NCBI Orthologs
+  prefix: ncbiortholog
 - homepage: https://www.ncbi.nlm.nih.gov/protein
   name: NCBI Protein
   prefix: ncbiprotein

docs/_data/warnings.yml

@@ -532,3 +532,8 @@ wrong_patterns:
   miriam: ^[A-Za-z-0-9_]+$
   name: Wikipedia
   prefix: wikipedia.en
+- correct: ^(CE[0-9]{5}|WB[A-Z][a-z]+\d+)$
+  homepage: https://www.wormbase.org/
+  miriam: ^WB[A-Z][a-z]+\d+$
+  name: WormBase
+  prefix: wormbase