Update Data #1404
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| name: Update Data | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 0 * * SAT" | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name != 'schedule' || github.repository == 'biopragmatics/bioregistry' }} | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| persist-credentials: false # otherwise, the token used is the GITHUB_TOKEN, instead of your personal token | |
| fetch-depth: 0 # otherwise, you will failed to push refs to dest repo | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| pip install tox tox-uv | |
| ############ | |
| # UPDATE # | |
| ############ | |
| - name: Create local changes | |
| id: update | |
| run: | | |
| tox -e update | |
| env: | |
| BIOPORTAL_API_KEY: ${{ secrets.BIOPORTAL_API_KEY }} | |
| ECOPORTAL_API_KEY: ${{ secrets.ECOPORTAL_API_KEY }} | |
| AGROPORTAL_API_KEY: ${{ secrets.AGROPORTAL_API_KEY }} | |
| FAIRSHARING_LOGIN: ${{ secrets.FAIRSHARING_LOGIN }} | |
| FAIRSHARING_PASSWORD: ${{ secrets.FAIRSHARING_PASSWORD }} | |
| NDEX_USERNAME: ${{ secrets.NDEX_USERNAME }} | |
| NDEX_PASSWORD: ${{ secrets.NDEX_PASSWORD }} | |
| - name: Check environment | |
| run: echo ${{ steps.update.outputs.BR_UPDATED }} | |
| - name: Commit files | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git commit --all -m "📮 Automatically update" | |
| # Not sure if this should be here or not - what if it pushes something bad that needs to be reverted? | |
| # - name: Push changes | |
| # if: steps.update.outputs.BR_UPDATED == 'true' | |
| # uses: ad-m/github-push-action@master | |
| # with: | |
| # github_token: ${{ secrets.GITHUB_TOKEN }} | |
| # branch: ${{ github.ref }} | |
| # tags: true | |
| - name: Run tests, don't push to PyPI unless passing | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e py | |
| ################## | |
| # MARK RELEASE # | |
| ################## | |
| - name: bump2version release | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e bumpversion-release | |
| ########## | |
| # PyPI # | |
| ########## | |
| - name: Release to PyPI | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e release | |
| env: | |
| TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
| TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
| - name: bump2version patch | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| tox -e bumpversion -- patch | |
| - name: Push changes | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ github.ref }} | |
| tags: true | |
| - name: Sleep to avoid race conditions | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: | | |
| sleep 300 | |
| ############ | |
| # DOCKER # | |
| ############ | |
| - name: Set up QEMU | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: docker/setup-qemu-action@v1 | |
| - name: Set up Docker Buildx | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Login to DockerHub | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build and push | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| id: docker_build | |
| uses: docker/build-push-action@v2 | |
| with: | |
| push: true | |
| # See: https://github.com/docker/build-push-action/blob/master/docs/advanced/multi-platform.md | |
| platforms: linux/amd64,linux/arm64 | |
| tags: biopragmatics/bioregistry:latest | |
| - name: Image digest | |
| if: steps.update.outputs.BR_UPDATED == 'true' | |
| run: echo ${{ steps.docker_build.outputs.digest }} |