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Update Phyml.pm #49

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qifei9 wants to merge 5 commits into bioperl:master from qifei9:master

qifei9 commented Mar 20, 2017

I updated Phyml.pm to:

Fix issues Bio::Tools::Run::Phylo::Phyml use default parameter for interleaved input, but it use sequential input #43 and Bio::Tools::Run::Phylo::Phyml, rand_starts cannot be set to 0 #44. The previous commit aiming these two issues did not actually fix them;
Make it compatible to -b (--bootstrap) option which could be set to 0, -1, -2, -4, -5;
Make parameters with value 0 could be passed to functions.

qifei9 and others added 5 commits

March 21, 2017 00:05


          Update Phyml.pm

35233d0


          Update Phyml.pm


          Merge branch 'master' of https://github.com/bioperl/bioperl-run

88359c1


          Merge remote-tracking branch 'upstream/master'

9ee51b7


          fix to get version of phyml

38367b2

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