Process completed with exit code 254.

Error: expect(received).toMatchSnapshot() Snapshot name: `gem2sResponse Starts a QC run when gem2s finishes 2` - Snapshot - 1 + Received + 146 Array [ Array [ "mockExperimentId", - Array [], + Object { + "cellSizeDistribution": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "binStep": 200, + "minCellSize": 1044, + }, + "enabled": false, + "filterSettings": Object { + "binStep": 200, + "minCellSize": 1044, + }, + }, + }, + "classifier": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "FDR": 0.02, + }, + "enabled": false, + "filterSettings": Object { + "FDR": 0.01, + }, + "prefiltered": true, + }, + }, + "configureEmbedding": Object { + "clusteringSettings": Object { + "method": "louvain", + "methodSettings": Object { + "louvain": Object { + "resolution": 0.8, + }, + }, + }, + "embeddingSettings": Object { + "method": "umap", + "methodSettings": Object { + "tsne": Object { + "learningRate": 200, + "perplexity": 30, + }, + "umap": Object { + "distanceMetric": "cosine", + "minimumDistance": 0.3, + }, + }, + }, + }, + "dataIntegration": Object { + "dataIntegration": Object { + "method": "harmony", + "methodSettings": Object { + "fastmnn": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + "harmony": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + "seuratv4": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + "unisample": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + }, + }, + "dimensionalityReduction": Object { + "excludeGeneCategories": Array [], + "method": "rpca", + "numPCs": 30, + }, + }, + "doubletScores": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "binStep": 0.05, + "probabilityThreshold": 0.6569474, + }, + "enabled": true, + "filterSettings": Object { + "binStep": 0.02, + "probabilityThreshold": 0.6569474, + }, + }, + }, + "mitochondrialContent": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "method": "absoluteThreshold", + "methodSettings": Object { + "absoluteThreshold": Object { + "binStep": 0.6, + "maxFraction": 0.07181355, + }, + }, + }, + "enabled": true, + "filterSettings": Object { + "method": "absoluteThreshold", + "methodSettings": Object { + "absoluteThreshold": Object { + "binStep": 0.3, + "maxFraction": 0.07181329, + }, + }, + }, + }, + }, + "numGenesVsNumUmis": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "regressionType": "linear", + "regressionTypeSettings": Object { + "linear": Object { + "p.level": 0.001, + }, + "spline": Object { + "p.level": 0.001, + }, + }, + }, + "enabled": true, + "filterSettings": Object { + "regressionType": "linear", + "regressionTypeSettings": Object { + "linear": Object { + "p.level": 0.001, + }, + "spline": Object { + "p.level": 0.001, + }, + }, + }, + }, + }, + }, "mockAuthJWT", "mockJobId", ], ] at Object.<anonymous> (/home/runner/work/api/api/tests/api.v2/helpers/pipeline/gem2s.test.js:135:59) at processTicksAndRejections (internal/process/task_queues.js:95:5)

Error: expect(received).toMatchSnapshot() Snapshot name: `gem2sResponse Starts a QC run when gem2s finishes and can duplicate defaultProcessingConfig ignoring entries that arent samples 2` - Snapshot - 1 + Received + 147 Array [ Array [ "mockExperimentId", - Array [], + Object { + "cellSizeDistribution": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "binStep": 200, + "minCellSize": 1044, + }, + "enabled": false, + "filterSettings": Object { + "binStep": 200, + "minCellSize": 1044, + }, + }, + }, + "classifier": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "FDR": 0.02, + }, + "enabled": false, + "filterSettings": Object { + "FDR": 0.01, + }, + "prefiltered": true, + }, + }, + "configureEmbedding": Object { + "clusteringSettings": Object { + "method": "louvain", + "methodSettings": Object { + "louvain": Object { + "resolution": 0.8, + }, + }, + }, + "embeddingSettings": Object { + "method": "umap", + "methodSettings": Object { + "tsne": Object { + "learningRate": 200, + "perplexity": 30, + }, + "umap": Object { + "distanceMetric": "cosine", + "minimumDistance": 0.3, + }, + }, + }, + }, + "dataIntegration": Object { + "dataIntegration": Object { + "method": "harmony", + "methodSettings": Object { + "fastmnn": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + "harmony": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + "seuratv4": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + "unisample": Object { + "normalisation": "logNormalize", + "numGenes": 2000, + }, + }, + }, + "dimensionalityReduction": Object { + "excludeGeneCategories": Array [], + "method": "rpca", + "numPCs": 30, + }, + }, + "doubletScores": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "binStep": 0.05, + "probabilityThreshold": 0.6569474, + }, + "enabled": true, + "filterSettings": Object { + "binStep": 0.02, + "probabilityThreshold": 0.6569474, + }, + }, + "someStepFlag": true, + }, + "mitochondrialContent": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "method": "absoluteThreshold", + "methodSettings": Object { + "absoluteThreshold": Object { + "binStep": 0.6, + "maxFraction": 0.07181355, + }, + }, + }, + "enabled": true, + "filterSettings": Object { + "method": "absoluteThreshold", + "methodSettings": Object { + "absoluteThreshold": Object { + "binStep": 0.3, + "maxFraction": 0.07181329, + }, + }, + }, + }, + }, + "numGenesVsNumUmis": Object { + "fc68aefc-c3ca-467f-8589-f1dbaaac1c1e": Object { + "auto": true, + "defaultFilterSettings": Object { + "regressionType": "linear", + "regressionTypeSettings": Object { + "linear": Object { + "p.level": 0.001, + }, + "spline": Object { + "p.level": 0.001, + }, + }, + }, + "enabled": true, + "filterSettings": Object { + "regressionType": "linear", + "regressionTypeSettings": Object { + "linear": Object { + "p.level": 0.001, + }, + "spline": Object { + "p.level": 0.001, + }, + }, + }, + }, + }, + }, "mockAuthJWT", "mockJobId", ], ] at Object.<anonymous> (/home/runner/work/api/api/tests/api.v2/helpers/pipeline/gem2s.test.js:180:59) at processTicksAndRejections (internal/process/task_queues.js:95:5)

Error: expect(jest.fn()).toHaveBeenCalledWith(...expected) Expected: "experimentId", [{"body": {"auto": true, "enabled": true, "f87892f0-3403-4ba9-b871-c366e3fa855e": {"auto": false, "defaultFilterSettings": {"regressionType": "linear", "regressionTypeSettings": {"linear": {"p.level": 0.001}, "spline": {"p.level": 0.001}}}, "enabled": true, "filterSettings": {"regressionType": "linear", "regressionTypeSettings": {"linear": {"p.level": 0.00095}, "spline": {"p.level": 0.001}}}}, "filterSettings": {"regressionType": "linear", "regressionTypeSettings": {"linear": {"p.level": 0.001}, "spline": {"p.level": 0.001}}}}, "name": "numGenesVsNumUmis"}], "mockAuthorization" Received: "experimentId", undefined, "mockAuthorization" Number of calls: 1 at Object.<anonymous> (/home/runner/work/api/api/tests/api.v2/controllers/qcController.test.js:88:48) at processTicksAndRejections (internal/process/task_queues.js:95:5)

Error: expect(jest.fn()).toHaveBeenCalledWith(...expected) Expected: "experimentId", [], "mockAuthorization" Received: "experimentId", undefined, "mockAuthorization" Number of calls: 1 at Object.<anonymous> (/home/runner/work/api/api/tests/api.v2/controllers/qcController.test.js:111:48) at processTicksAndRejections (internal/process/task_queues.js:95:5)

Some jest tests failed.

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No updates were made to PR title

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No updates were made to PR body

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Your docker password is not masked. See https://github.com/aws-actions/amazon-ecr-login#docker-credentials for more information.

Your docker password is not masked. See https://github.com/aws-actions/amazon-ecr-login#docker-credentials for more information.