Produced data and code used in the PAS project
"PAS_clusters" contains sequences (in fasta format), alphafold structures, sequence logos, and distances for clusters, as well as a summary of all clusters.
"PAS_phylogenetic_trees" contains multiple sequence alignments and phylogenetic trees used for tree building.
"Scripts" contains all Python scripts used for analyses on PAS domain distributions.
"Cluster_HMMs.zip" contains HMM for each cluster.
"PAS domain sequences.zip" contains all sequences used for clustering (in fasta format).