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toniher committed Dec 3, 2024
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9 changes: 9 additions & 0 deletions MOP1.1/Gemfile
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source "https://rubygems.org"

gem "jekyll"
gem "rake", "~> 13.0"

group :jekyll_plugins do
gem "jekyll-feed"
gem "jekyll-seo-tag"
end
174 changes: 174 additions & 0 deletions MOP1.1/Gemfile.lock
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GEM
remote: https://rubygems.org/
specs:
addressable (2.8.7)
public_suffix (>= 2.0.2, < 7.0)
bigdecimal (3.1.8)
colorator (1.1.0)
concurrent-ruby (1.3.4)
em-websocket (0.5.3)
eventmachine (>= 0.12.9)
http_parser.rb (~> 0)
eventmachine (1.2.7)
ffi (1.17.0)
ffi (1.17.0-aarch64-linux-gnu)
ffi (1.17.0-aarch64-linux-musl)
ffi (1.17.0-arm-linux-gnu)
ffi (1.17.0-arm-linux-musl)
ffi (1.17.0-arm64-darwin)
ffi (1.17.0-x86-linux-gnu)
ffi (1.17.0-x86-linux-musl)
ffi (1.17.0-x86_64-darwin)
ffi (1.17.0-x86_64-linux-gnu)
ffi (1.17.0-x86_64-linux-musl)
forwardable-extended (2.6.0)
google-protobuf (4.29.0)
bigdecimal
rake (>= 13)
google-protobuf (4.29.0-aarch64-linux)
bigdecimal
rake (>= 13)
google-protobuf (4.29.0-arm64-darwin)
bigdecimal
rake (>= 13)
google-protobuf (4.29.0-x86-linux)
bigdecimal
rake (>= 13)
google-protobuf (4.29.0-x86_64-darwin)
bigdecimal
rake (>= 13)
google-protobuf (4.29.0-x86_64-linux)
bigdecimal
rake (>= 13)
http_parser.rb (0.8.0)
i18n (1.14.6)
concurrent-ruby (~> 1.0)
jekyll (4.3.4)
addressable (~> 2.4)
colorator (~> 1.0)
em-websocket (~> 0.5)
i18n (~> 1.0)
jekyll-sass-converter (>= 2.0, < 4.0)
jekyll-watch (~> 2.0)
kramdown (~> 2.3, >= 2.3.1)
kramdown-parser-gfm (~> 1.0)
liquid (~> 4.0)
mercenary (>= 0.3.6, < 0.5)
pathutil (~> 0.9)
rouge (>= 3.0, < 5.0)
safe_yaml (~> 1.0)
terminal-table (>= 1.8, < 4.0)
webrick (~> 1.7)
jekyll-feed (0.17.0)
jekyll (>= 3.7, < 5.0)
jekyll-sass-converter (3.0.0)
sass-embedded (~> 1.54)
jekyll-seo-tag (2.8.0)
jekyll (>= 3.8, < 5.0)
jekyll-watch (2.2.1)
listen (~> 3.0)
kramdown (2.5.1)
rexml (>= 3.3.9)
kramdown-parser-gfm (1.1.0)
kramdown (~> 2.0)
liquid (4.0.4)
listen (3.9.0)
rb-fsevent (~> 0.10, >= 0.10.3)
rb-inotify (~> 0.9, >= 0.9.10)
mercenary (0.4.0)
pathutil (0.16.2)
forwardable-extended (~> 2.6)
public_suffix (6.0.1)
rake (13.2.1)
rb-fsevent (0.11.2)
rb-inotify (0.11.1)
ffi (~> 1.0)
rexml (3.3.9)
rouge (4.5.1)
safe_yaml (1.0.5)
sass-embedded (1.81.1)
google-protobuf (~> 4.28)
rake (>= 13)
sass-embedded (1.81.1-aarch64-linux-android)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-aarch64-linux-gnu)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-aarch64-linux-musl)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-aarch64-mingw-ucrt)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-arm-linux-androideabi)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-arm-linux-gnueabihf)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-arm-linux-musleabihf)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-arm64-darwin)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-riscv64-linux-android)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-riscv64-linux-gnu)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-riscv64-linux-musl)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86-cygwin)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86-linux-android)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86-linux-gnu)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86-linux-musl)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86-mingw-ucrt)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86_64-cygwin)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86_64-darwin)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86_64-linux-android)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86_64-linux-gnu)
google-protobuf (~> 4.28)
sass-embedded (1.81.1-x86_64-linux-musl)
google-protobuf (~> 4.28)
terminal-table (3.0.2)
unicode-display_width (>= 1.1.1, < 3)
unicode-display_width (2.6.0)
webrick (1.9.1)

PLATFORMS
aarch64-linux
aarch64-linux-android
aarch64-linux-gnu
aarch64-linux-musl
aarch64-mingw-ucrt
arm-linux-androideabi
arm-linux-gnu
arm-linux-gnueabihf
arm-linux-musl
arm-linux-musleabihf
arm64-darwin
riscv64-linux-android
riscv64-linux-gnu
riscv64-linux-musl
ruby
x86-cygwin
x86-linux
x86-linux-android
x86-linux-gnu
x86-linux-musl
x86-mingw-ucrt
x86_64-cygwin
x86_64-darwin
x86_64-linux-android
x86_64-linux-gnu
x86_64-linux-musl

DEPENDENCIES
jekyll
jekyll-feed
jekyll-seo-tag
rake (~> 13.0)

BUNDLED WITH
2.5.22
2 changes: 1 addition & 1 deletion MOP1.1/_config.yml
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title: Master of Pores
description: Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing.
url: "https://biocorecrg.github.io/master_of_pores/"
url: "https://biocorecrg.github.io/master_of_pores/MOP1.1/"

# Build settings
markdown: kramdown
Expand Down
55 changes: 55 additions & 0 deletions MOP1.1/_site/404.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">

<title>Master of Pores</title>
<meta name="description" content="Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing.">

<link rel="icon" href="/assets/images/favicon.ico">
<link rel="canonical" href="https://biocorecrg.github.io/master_of_pores/MOP1.1//404.html">

<link rel="stylesheet" href="/assets/css/docs.css">

</head>

<body>
<div class="wrapper">
<sidebar class="sidebar" id="sidebar">
<div class="sidebar-mobile">
<img src="/assets/images/menu.svg" class="menu-icon" id="menu" />
<img src="/assets/images/close.svg" class="close-icon" id="close" />
</div>
<div class="search">
<input type="text" class="search-input" id="search-input" placeholder="Type to search" />
</div>

<div class="sidebar-main">
<ul class="navigation" id="navigation"> <li> <a class="" href="/"> Home </a> </li> <li> <a class="" href="/install.html"> Installation </a> </li> <li> <a class="" href="/nanopreprocess.html"> NanoPreprocess </a> </li> <li> <a class="" href="/nanotail.html"> NanoTail </a> </li> <li> <a class="" href="/nanomod.html"> NanoMod </a> </li> <li> <a class="" href="/cloud.html"> Running on the cloud </a> </li> </ul>

<ul id="search-results" class="navigation"></ul>

</div>
</sidebar>

<main class="content">
<div class="inner">
<h1>404</h1>

<p><strong>Page not found :(</strong></p>
<p>The requested page could not be found.</p>

</div>
</main>
</div>
<script src="/assets/js/zepto.min.js"></script>
<script src="/assets/js/lunar.min.js"></script>
<script src="/assets/js/prism.min.js"></script>
<script src="/assets/js/database.js"></script>
<script src="/assets/js/search.js"></script>
<script src="/assets/js/mobile-navigation.js"></script>

</body>
</html>
7 changes: 7 additions & 0 deletions MOP1.1/_site/assets/css/docs.css

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1 change: 1 addition & 0 deletions MOP1.1/_site/assets/css/docs.css.map

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3 changes: 3 additions & 0 deletions MOP1.1/_site/assets/images/close.svg
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