adding mop2

biocorecrg · Sep 9, 2024 · 8cca812 · 8cca812
1 parent 525b98f
commit 8cca812
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Showing 51 changed files with 13 additions and 12,465 deletions.
diff --git a/.gitattributes b/.gitattributes
@@ -2,3 +2,4 @@
 *.css linguist-detectable=false
 *.js linguist-detectable=false
 *.py linguist-detectable=false
+*.R linguist-detectable=false
diff --git a/.gitignore b/.gitignore
@@ -1,13 +1,9 @@
-*/log*
-anno*
-*/rep*
-NanoPreprocess/preproc_data
-NanoPreprocess/wrong
-real_data
-NanoPreprocess/bin/guppy*
-NanoPreprocess/bin/ont-guppy*
-log
-*/out*
-work
 singularity
-.nextflow*
+mop_preprocess/bin/multi_to_single_fast5
+mop_preprocess/bin/read_fast5_basecaller.py
+mop_preprocess/bin/ont*
+mop_preprocess/bin/lib*
+mop_preprocess/bin/MINIMAP2_LICENSE
+mop_preprocess/bin/guppy*
+*/work
+*/.next*
diff --git a/.gitmodules b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "BioNextflow"]
+	path = BioNextflow
+	url = https://github.com/biocorecrg/BioNextflow
diff --git a/.travis.yml b/.travis.yml
diff --git a/BioNextflow b/BioNextflow
diff --git a/CHANGELOG.md b/CHANGELOG.md
diff --git a/NanoMod/bin/epinano_paired.py b/NanoMod/bin/epinano_paired.py
diff --git a/NanoMod/bin/epinano_scatterplot.R b/NanoMod/bin/epinano_scatterplot.R
diff --git a/NanoMod/bin/join.r b/NanoMod/bin/join.r
diff --git a/NanoMod/bin/tombo_2_bed.sh b/NanoMod/bin/tombo_2_bed.sh