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toniher committed Dec 3, 2024
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2 changes: 1 addition & 1 deletion docs/index.md
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# ![Direct RNA nanopore analysis pipeline](https://raw.githubusercontent.com/biocorecrg/master_of_pores/master/docs/logo_master.jpg)
# ![Direct RNA nanopore analysis pipeline](https://raw.githubusercontent.com/biocorecrg/master_of_pores/v1.1/docs/logo_master.jpg)

# Nanopore analysis pipeline v1.5
Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing. This is a joint project between [CRG bioinformatics core](https://biocore.crg.eu/) and [Epitranscriptomics and RNA Dynamics research group](https://www.crg.eu/en/programmes-groups/novoa-lab).
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2 changes: 1 addition & 1 deletion docs/nanomod.md
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## Workflow

<img src="https://raw.githubusercontent.com/biocorecrg/master_of_pores/master/docs/dag_mod_2.png" width="600" align="middle">
<img src="https://raw.githubusercontent.com/biocorecrg/master_of_pores/v1.1/docs/dag_mod_2.png" width="600" align="middle">


* **index_reference** index the reference file for Epinano
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2 changes: 1 addition & 1 deletion docs/nanopreprocess.md
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## Workflow

<img src="https://raw.githubusercontent.com/biocorecrg/master_of_pores/master/docs/dag_graph3.png" width="600" align="middle">
<img src="https://raw.githubusercontent.com/biocorecrg/master_of_pores/v1.1/docs/dag_graph3.png" width="600" align="middle">

| Process name | Description |
| ------------- | ------------- |
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2 changes: 1 addition & 1 deletion docs/nanotail.md
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# Workflow

<img src="https://raw.githubusercontent.com/biocorecrg/master_of_pores/master/docs/dag_nanotail.png" width="600" align="middle">
<img src="https://raw.githubusercontent.com/biocorecrg/master_of_pores/v1.1/docs/dag_nanotail.png" width="600" align="middle">

1. **check_reference** It verifies whether the reference is zipped and eventually unzip it
1. **tailfindr** it runs *tailfindr* tool in parallel.
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