deploy: e22673d

biocorecrg · Dec 2, 2024 · 58b2389 · 58b2389
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diff --git a/MOP1.1 b/MOP1.1
diff --git a/MOP1.1/docs/404.html b/MOP1.1/docs/404.html
@@ -0,0 +1,8 @@
+---
+layout: default
+---
+
+<h1>404</h1>
+
+<p><strong>Page not found :(</strong></p>
+<p>The requested page could not be found.</p>
diff --git a/MOP1.1/docs/_config.yml b/MOP1.1/docs/_config.yml
@@ -0,0 +1,13 @@
+title: Master of Pores
+description: Nextflow pipeline for analysis of Nanopore data from direct RNA sequencing.
+url: "https://biocorecrg.github.io/master_of_pores/" 
+
+# Build settings
+markdown: kramdown
+kramdown:
+  syntax_highlighter_opts:
+    disable : true
+
+sass:
+  sass_dir: _sass
+  style: compressed
diff --git a/MOP1.1/docs/_includes/head.html b/MOP1.1/docs/_includes/head.html
@@ -0,0 +1,13 @@
+<head>
+  <meta charset="utf-8">
+  <meta http-equiv="X-UA-Compatible" content="IE=edge">
+  <meta name="viewport" content="width=device-width, initial-scale=1">
+
+  <title>{% if page.title %}{{ page.title | escape }}{% else %}{{ site.title | escape }}{% endif %}</title>
+  <meta name="description" content="{{ page.excerpt | default: site.description | strip_html | normalize_whitespace | truncate: 160 | escape }}">
+
+	<link rel="icon" href="{{ "/assets/images/favicon.ico" | relative_url }}">
+  <link rel="canonical" href="{{ page.url | replace:'index.html','' | absolute_url }}">
+
+	{% include styles.html %}
+</head>
diff --git a/MOP1.1/docs/_includes/navigation.html b/MOP1.1/docs/_includes/navigation.html
@@ -0,0 +1,14 @@
+{% capture html %}
+<ul class="navigation" id="navigation">
+	{% assign entries = site.pages | sort: "navigation" %}
+	{% for entry in entries %}
+		{% if entry.navigation %}
+			<li>
+				<a class="{% if page.url == entry.url entry.url %}active{% endif %}" href="{{ entry.url | relative_url }}">
+					{{ entry.title }}
+				</a>
+			</li>
+		{% endif %}
+	{% endfor %}
+</ul>
+{% endcapture %}{{ html | strip_newlines | replace:'    ','' | replace:'    ','' | replace:'  ',' ' }}
diff --git a/MOP1.1/docs/_includes/scripts.html b/MOP1.1/docs/_includes/scripts.html
@@ -0,0 +1,6 @@
+<script src="{{ "/assets/js/zepto.min.js" | relative_url }}"></script>
+<script src="{{ "/assets/js/lunar.min.js" | relative_url }}"></script>
+<script src="{{ "/assets/js/prism.min.js" | relative_url }}"></script>
+<script src="{{ "/assets/js/database.js" | relative_url }}"></script>
+<script src="{{ "/assets/js/search.js" | relative_url }}"></script>
+<script src="{{ "/assets/js/mobile-navigation.js" | relative_url }}"></script>
diff --git a/MOP1.1/docs/_includes/search-results.html b/MOP1.1/docs/_includes/search-results.html
@@ -0,0 +1 @@
+<ul id="search-results" class="navigation"></ul>
diff --git a/MOP1.1/docs/_includes/search.html b/MOP1.1/docs/_includes/search.html
@@ -0,0 +1,3 @@
+<div class="search">
+	<input type="text" class="search-input" id="search-input" placeholder="Type to search" />
+</div>
diff --git a/MOP1.1/docs/_includes/sidebar.html b/MOP1.1/docs/_includes/sidebar.html
@@ -0,0 +1,11 @@
+<sidebar class="sidebar" id="sidebar">
+	<div class="sidebar-mobile">
+		<img src="{{ "/assets/images/menu.svg" | relative_url }}" class="menu-icon" id="menu" />
+		<img src="{{ "/assets/images/close.svg" | relative_url }}" class="close-icon" id="close" />
+	</div>
+	{% include search.html %}
+	<div class="sidebar-main">
+		{% include navigation.html %}
+		{% include search-results.html %}
+	</div>
+</sidebar>
diff --git a/MOP1.1/docs/_includes/styles.html b/MOP1.1/docs/_includes/styles.html
@@ -0,0 +1 @@
+<link rel="stylesheet" href="{{ "/assets/css/docs.css" | relative_url }}">
diff --git a/MOP1.1/docs/_layouts/default.html b/MOP1.1/docs/_layouts/default.html
@@ -0,0 +1,15 @@
+<!DOCTYPE html>
+<html lang="{{ page.lang | default: site.lang | default: "en" }}">
+	{% include head.html %}
+	<body>
+		<div class="wrapper">
+			{% include sidebar.html %}
+			<main class="content">
+				<div class="inner">
+					{{ content }}
+				</div>
+			</main>
+		</div>
+		{% include scripts.html %}
+	</body>
+</html>
diff --git a/MOP1.1/docs/_layouts/page.html b/MOP1.1/docs/_layouts/page.html
@@ -0,0 +1,5 @@
+---
+layout: default
+---
+
+{{ content }}
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		@@ -0,0 +1 @@
		<ul id="search-results" class="navigation"></ul>
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		@@ -0,0 +1 @@
		<link rel="stylesheet" href="{{ "/assets/css/docs.css" \| relative_url }}">