Update README.md #14
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: mop4-CI | |
| # When this workflow is triggered | |
| on: | |
| push: | |
| paths-ignore: | |
| - 'docs/**' | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/**' | |
| jobs: | |
| build: | |
| name: mop4 ci | |
| # This job runs on Linux | |
| runs-on: ubuntu-20.04 | |
| timeout-minutes: 90 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| java_version: [11] | |
| steps: | |
| - name: Delete huge unnecessary tools folder | |
| uses: jlumbroso/free-disk-space@main | |
| with: | |
| tool-cache: true | |
| - name: Environment | |
| run: env | sort | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ github.token }} | |
| repository: biocorecrg/MOP4 | |
| fetch-depth: 1 | |
| submodules: true | |
| - name: Setup Java | |
| uses: actions/setup-java@v2 | |
| with: | |
| java-version: ${{ matrix.java_version }} | |
| distribution: 'adopt' | |
| architecture: x64 | |
| - name: MOP4 | |
| run: | | |
| curl -fsSL get.nextflow.io | bash | |
| cd mop_preprocess | |
| ../nextflow run mop_preprocess.nf -params-file params.yaml -with-docker -profile ci | |
| # cd ../mop_mod | |
| # ../nextflow run mop_mod.nf -params-file params.yaml -with-docker -profile ci | |
| # cd ../mop_tail | |
| # ../nextflow run mop_tail.nf -with-docker -params-file params.yaml -profile ci | |
| env: | |
| NXF_ANSI_LOG: false |