removing #6

	name: mop3-CI
	# When this workflow is triggered
	on:
	push:
	paths-ignore:
	- 'docs/**'
	pull_request:
	paths-ignore:
	- 'docs/**'

	jobs:
	build:
	name: mop3 ci
	# This job runs on Linux
	runs-on: ubuntu-20.04
	timeout-minutes: 90
	strategy:
	fail-fast: false
	matrix:
	java_version: [11]

	steps:
	- name: Delete huge unnecessary tools folder
	uses: jlumbroso/free-disk-space@main
	with:
	tool-cache: true

	- name: Environment
	run: env \| sort

	- name: Checkout
	uses: actions/checkout@v3
	with:
	token: ${{ github.token }}
	repository: biocorecrg/master_of_pores
	fetch-depth: 1
	submodules: true

	- name: Setup Java
	uses: actions/setup-java@v2
	with:
	java-version: ${{ matrix.java_version }}
	distribution: 'adopt'
	architecture: x64

	- name: MOP3
	run: \|
	curl -fsSL get.nextflow.io \| bash
	bash INSTALL.sh
	cd mop_preprocess
	../nextflow run mop_preprocess.nf -params-file params.f5.yaml -with-docker -profile ci
	cd ../mop_mod
	../nextflow run mop_mod.nf -params-file params.yaml -with-docker -profile ci
	cd ../mop_tail
	../nextflow run mop_tail.nf -with-docker -params-file params.yaml -profile ci

	env:
	NXF_ANSI_LOG: false

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