Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

chore: Bump bamtools to 2.5.2 #988

Closed

Conversation

martin-g
Copy link
Contributor

2.5.2 is the only version at the moment that provides linux-aarch64 package: https://anaconda.org/bioconda/bamtools/files

I faced the following error

WARNING: failed to get package records, retrying.  exception was: Unsatisfiable dependencies for platform linux-aarch64: {MatchSpec("bamtools=2.5.1")}
Encountered problems while solving:
  - nothing provides requested bamtools 2.5.1.*

while adding linux-aarch64 to scalpel
(bioconda/bioconda-recipes#47964)

Full logs with the error:

Successful build after adding custom conda_build_config.yaml for scalpel:

2.5.2 is the only version at the moment that provides linux-aarch64
package: https://anaconda.org/bioconda/bamtools/files

I faced the following error
```
WARNING: failed to get package records, retrying.  exception was: Unsatisfiable dependencies for platform linux-aarch64: {MatchSpec("bamtools=2.5.1")}
Encountered problems while solving:
  - nothing provides requested bamtools 2.5.1.*
```
while adding linux-aarch64 to `scalpel`
  (bioconda/bioconda-recipes#47964)

Full logs with the error:
- https://circleci.com/api/v1.1/project/github/bioconda/bioconda-recipes/186948/output/107/0?file=true&allocation-id=664c88870a2ca54ac5eb924f-0-build%2FABCDEFGH

Successful build after adding custom conda_build_config.yaml for
scalpel:
- https://app.circleci.com/pipelines/github/bioconda/bioconda-recipes/116194/workflows/00d6dc8f-1d05-48a5-b15f-1ae3bff71433/jobs/186951

Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>
@martin-g martin-g changed the title Bump bamtools to 2.5.2 chore: Bump bamtools to 2.5.2 May 21, 2024
aliciaaevans pushed a commit that referenced this pull request Jun 3, 2024
Amongst others, this includes:
- Update default minimum system targets to
- `glibc 2.17`/CentOS 7 ( \*needs recipes to include new `- {{
stdlib("c") }}` dep in `requirements/build`)
    - macOS 10.13
- Python 3.11 and 3.12

closes gh-938, gh-988

---------

Signed-off-by: Marcel Bargull <[email protected]>
@martin-g
Copy link
Contributor Author

martin-g commented Jun 4, 2024

Done with #991

@martin-g martin-g closed this Jun 4, 2024
@martin-g martin-g deleted the bamtools-2.5.2-for-aarch64 branch June 4, 2024 06:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant