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Remove outdated workaround in container creation
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Signed-off-by: Marcel Bargull <[email protected]>
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mbargull committed Mar 27, 2024
1 parent e61fb7e commit aba99f9
Showing 1 changed file with 3 additions and 7 deletions.
10 changes: 3 additions & 7 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -51,14 +51,10 @@ RUN . /opt/conda/etc/profile.d/conda.sh && conda activate base && \
sed -nE \
'/^conda([><!=~ ].+)?$/p' \
/opt/bioconda-utils/bioconda_utils-requirements.txt \
| xargs -r mamba install --yes && \
# FIXME: "remove truststore" only necessary due to python downgrade.
# Updating requirements should fix that.
# (Also this removal will break in future.)
mamba remove --yes truststore && \
mamba install --yes --file /opt/bioconda-utils/bioconda_utils-requirements.txt && \
| xargs -r conda install --yes && \
conda install --yes --file /opt/bioconda-utils/bioconda_utils-requirements.txt && \
pip install --no-deps --find-links /opt/bioconda-utils bioconda_utils && \
mamba clean --yes --index --tarballs && \
conda clean --yes --index --tarballs && \
# Find files that are not already in group "lucky" and change their group and mode.
find /opt/conda \
\! -group lucky \
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