Update falco to 1.2.5

[BiocondaBot]

Update falco: 1.2.4 → 1.2.5

Info	Link or Description
Recipe	recipes/falco (click to view/edit other files)
Summary	falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.

Home | https://github.com/smithlabcode/falco
Releases |
Recipe Maintainer(s) | @andrewdavidsmith, @guilhermesena1
Author | @smithlabcode

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[pdimens]

@andrewdavidsmith can you identify why the macOS build isn't working?

[andrewdavidsmith]

Will do. Can you confirm it's x86 that's the issue? That's the only macOS I have access to rn.

[pdimens]

@andrewdavidsmith IIUC, it's x86: https://github.com/bioconda/bioconda-recipes/actions/runs/11964515768/job/33357256284?pr=52297#step:7:728

[andrewdavidsmith]

Got it. Hopefully next few hours.

[andrewdavidsmith]

@pdimens Might take some time. I assumed it was the make check step, which fails for me due to different cli for the md5sum command, which I use to validate test output files. But what I'm seeing in the workflow file has drifted a bit from what I originally had and the logs aren't telling me much. There will be some trial-and-error here unless someone else has some insights. If there's anything I need to open up to allow others modify parts of this PR, I'm happy to do that and happy for anyone's help.

[andrewdavidsmith]

@mencian Thanks for this, but it didn't work. I only have gcc and llvm-clang (not darwin-clang) on my mac. I can see that the darwin-clang is used to try and compile, but I can't really debug that. I would try to switch it to gcc. My approach to getting it to work with htslib isn't the same as was put into the meta.yml file, so this is drifting a bit away from what I know. Is it possible to pull in gcc and build with CXX=g++? Thanks for any help -- I'll try to look at other recipes.

[andrewdavidsmith]

In case it helps, this is how I configure to compile falco on my Mac and it should indicate lots about my env:

../configure CPPFLAGS="-I$(brew --prefix)/include" LDFLAGS="-L$(brew --prefix)/lib" CC="gcc-14" CXX="g++-14" --prefix=${HOME}

I think I got all dependencies from Homebrew (zlib, htslib and gcc).