Update GoldRush: pin minimap2 #52203
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🔇 Additional comments (2)recipes/goldrush/meta.yaml (2)
Correctly incremented the build number as we're modifying package dependencies without changing the version.
The addition of
✅ Verification successfulVersion constraint The verification shows that:
The constraint
🏁 Scripts executedThe following scripts were executed for the analysis: Script: #!/bin/bash
# Description: Check minimap2 version compatibility with other dependencies
# Check if any other packages in bioconda-recipes specify different minimap2 version constraints
rg -l "minimap2.*[><=]" | while read -r file; do
echo "=== $file ==="
rg "minimap2.*[><=]" "$file"
done
# Check if version 2.17 is the earliest version with the required feature
# by looking for related changes in minimap2's changelog or release notes
gh api repos/lh3/minimap2/releases | jq -r '.[] | select(.tag_name | contains("v2.17")) | .body'
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@BiocondaBot please add label |
Pin minimap2 to avoid issues where it installed an older version of minimape2 that doesn't have required feature.
Please read the guidelines for Bioconda recipes before opening a pull request (PR).
General instructions
@BiocondaBot please add labelcommand.@bioconda/corein a comment.Instructions for avoiding API, ABI, and CLI breakage issues
Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify
run_exports(see here for the rationale and comprehensive explanation).Add a
run_exportssection like this:with
...being one of:{{ pin_subpackage("myrecipe", max_pin="x") }}{{ pin_subpackage("myrecipe", max_pin="x.x") }}{{ pin_subpackage("myrecipe", max_pin="x.x") }}(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin="x.x.x") }}(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin=None) }}while replacing
"myrecipe"with eithernameif aname|lowervariable is defined in your recipe or with the lowercase name of the package in quotes.Bot commands for PR management
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