Parm v0.0.7 #52182
Parm v0.0.7 #52182
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📝 Walkthrough📝 WalkthroughWalkthroughThe pull request introduces updates to the Warning Rate limit exceeded@vhfsantos has exceeded the limit for the number of commits or files that can be reviewed per hour. Please wait 14 minutes and 59 seconds before requesting another review. ⌛ How to resolve this issue?After the wait time has elapsed, a review can be triggered using the We recommend that you space out your commits to avoid hitting the rate limit. 🚦 How do rate limits work?CodeRabbit enforces hourly rate limits for each developer per organization. Our paid plans have higher rate limits than the trial, open-source and free plans. In all cases, we re-allow further reviews after a brief timeout. Please see our FAQ for further information. Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media? 🪧 TipsChatThere are 3 ways to chat with CodeRabbit:
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/parm/meta.yaml (1)
Line range hint
38-39: Enhance test coverage for new featuresThe current test only verifies the help command. Consider adding tests to verify the new required column name argument functionality.
test: commands: - parm train --help + - parm train --help | grep -q "column-name" # Verify new argument is documented🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (1)
recipes/parm/meta.yaml(2 hunks)
🧰 Additional context used
🪛 yamllint
recipes/parm/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (3)
recipes/parm/meta.yaml (3)
13-13: LGTM: Build number reset
Correctly reset build number to 0 for the new version.
1-2: Verify version and SHA256 checksum
The version bump to 0.0.7 matches the PR title. Let's verify the SHA256 checksum matches the GitHub release.
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
Line range hint 21-36: Verify dependencies for new features
The dependencies list includes all required packages for the new features (pandas for column operations, tqdm for progress bars). However, let's verify if any new dependencies were added in the upstream repository for v0.0.7.
✅ Verification successful
Let me gather more information by checking the dependencies in the repository's documentation.
Let me check the repository's documentation specifically for PARM to get more information about dependencies.
Based on the gathered information, I can now provide the final response:
Dependencies are correctly specified and sufficient for new features
The dependencies listed in meta.yaml are comprehensive and align with the package requirements:
- All core dependencies for the new features are present (pandas for column operations, tqdm for progress bars)
- The upstream setup.py only specifies 'torchsummary' as it relies on conda environment for other dependencies
- The version requirements (numpy >=1.26.0) are appropriate and match the latest package versions
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Description: Check for dependency changes in setup.py between versions
# Expected: Dependencies should match between meta.yaml and upstream
# Get setup.py from new version
curl -sL https://raw.githubusercontent.com/vansteensellab/PARM/v0.0.7/setup.py
# Compare with previous version
curl -sL https://raw.githubusercontent.com/vansteensellab/PARM/v0.0.6/setup.py
Length of output: 1432
Script:
#!/bin/bash
# Check dependencies in README and documentation
fd "README.md|requirements.txt" --exec cat {}
Length of output: 4484
Script:
#!/bin/bash
# Check PARM's documentation
curl -sL https://raw.githubusercontent.com/vansteensellab/PARM/v0.0.7/README.md
Length of output: 5059
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
What's Changed
Some important changes in the
parm traintask:model.parm. Now, it is automatically set to the name of the cell type set by the user.Small changes:
Full Changelog: vansteensellab/PARM@v0.0.6...v0.0.7