Update cnvkit to 0.9.12

[BiocondaBot]

Update cnvkit: 0.9.11 → 0.9.12

Info	Link or Description
Recipe	recipes/cnvkit (click to view/edit other files)
Summary	Copy number variant detection from high-throughput sequencing.
Home	https://github.com/etal/cnvkit
Releases	https://github.com/etal/cnvkit/tags
Author	@etal

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

The pull request updates the meta.yaml file for the cnvkit package. The primary change is the version number, which has been incremented from 0.9.11 to 0.9.12. Alongside this version update, the SHA256 checksum for the source tarball has been modified from 1763936427184270108fd51219ebc82f542e28339bdec587579b8745f61179a8 to 39d65ba3d9c541dfd80986ace298b2d521067d1b81edef7169196b8dcc5d63d5. The setuptools dependency has been added to the host requirements. Additionally, several strings in the about section have been reformatted to include quotes, and the summary line has been updated to include a period at the end. No other alterations were made to the file, meaning that package metadata, requirements, and other configurations remain unchanged.

Possibly related PRs

• Update biocode to 0.12.0 #51444: Update biocode to 0.12.0 - This PR updates the meta.yaml file for the biocode package, similar to the main PR's update of the cnvkit package's meta.yaml, including the addition of the setuptools dependency.
• Update quantms-utils to 0.0.12 #51357: Update quantms-utils to 0.0.12 - This PR also updates the meta.yaml file for the quantms-utils package, adding setuptools to the host requirements, paralleling the changes made in the main PR.
• Update metabolabpy to 0.9.59 #51572: Update metabolabpy to 0.9.59 - This PR updates the meta.yaml file for the metabolabpy package, adding setuptools to the host requirements, which aligns with the changes in the main PR.

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 16bb7f1 and 1cb65d2.

📒 Files selected for processing (1)

• recipes/cnvkit/meta.yaml (3 hunks)

🚧 Files skipped from review as they are similar to previous changes (1)

• recipes/cnvkit/meta.yaml

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.