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Update r-archr to 1.0.3 #52121

Merged
merged 14 commits into from
Nov 20, 2024
29 changes: 19 additions & 10 deletions recipes/r-archr/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
{% set version = '1.0.2' %}
{% set version = '1.0.3' %}
{% set github = 'https://github.com/GreenleafLab/ArchR' %}
{% set posix = 'm2-' if win else '' %}

Expand All @@ -8,9 +8,7 @@ package:

source:
url: {{ github }}/archive/refs/tags/v{{ version }}.tar.gz
sha256: afe4d82975e9d75018e9ec9fda3d116f34f99ad1d45990cbc5a2be7dea8df352
patches:
- patches/0001-cap-threads.patch
sha256: 9c07c785a095062a998ed94c65df17a58f273d0d64062c14210f0a2c491304cf

build:
number: 0
Expand All @@ -26,7 +24,7 @@ requirements:
- {{ compiler('c') }}
- {{ compiler('cxx') }}
host:
- r-base =4.1
- r-base
- bioconductor-biocgenerics
- bioconductor-biostrings
- bioconductor-chromvar
Expand All @@ -37,7 +35,9 @@ requirements:
- bioconductor-rsamtools
- bioconductor-s4vectors >=0.9.25
- bioconductor-summarizedexperiment
- r-chromvarmotifs
- r-data.table
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- r-devtools
- r-ggplot2
- r-ggrepel
- r-gridextra
Expand All @@ -48,11 +48,15 @@ requirements:
- r-matrixstats
- r-nabor
- r-plyr
- r-presto
- r-rcpp >=0.12.16
- r-rcpparmadillo
- r-seurat
- r-seuratobject
- r-stringr
- r-uwot
run:
- r-base =4.1
- r-base
- bioconductor-biocgenerics
- bioconductor-biostrings
- bioconductor-chromvar
Expand All @@ -63,7 +67,9 @@ requirements:
- bioconductor-rsamtools
- bioconductor-s4vectors >=0.9.25
- bioconductor-summarizedexperiment
- r-chromvarmotifs
- r-data.table
- r-devtools
- r-ggplot2
- r-ggrepel
- r-gridextra
Expand All @@ -74,7 +80,11 @@ requirements:
- r-matrixstats
- r-nabor
- r-plyr
- r-presto
- r-rcpp >=0.12.16
- r-rcpparmadillo
- r-seurat
- r-seuratobject
- r-stringr
- r-uwot

Expand All @@ -86,12 +96,11 @@ about:
home: https://www.archrproject.com
dev_url: {{ github }}
doc_url: https://www.archrproject.com/bookdown/index.html
license: GPL-2.0-or-later
license: MIT
summary: This package is designed to streamline scATAC analyses in R.
license_family: GPL2
license_family: MIT
license_file:
- {{ environ['PREFIX'] }}/lib/R/share/licenses/GPL-2
- {{ environ['PREFIX'] }}/lib/R/share/licenses/GPL-3
- {{ environ['PREFIX'] }}/lib/R/share/licenses/MIT

extra:
recipe-maintainers:
Expand Down
36 changes: 0 additions & 36 deletions recipes/r-archr/patches/0001-cap-threads.patch

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