Update fastp to 0.24.0

[BiocondaBot]

Update fastp: 0.23.4 → 0.24.0

Info	Link or Description
Recipe	recipes/fastp (click to view/edit other files)
Summary	A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
Home	https://github.com/OpenGene/fastp
Releases	https://github.com/OpenGene/fastp/tags
Author	@OpenGene

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request involves an update to the meta.yaml file for the fastp package. The version is changed from 0.23.4 to 0.24.0, reflecting a new release of the package. Correspondingly, the source URL has been adjusted to point to the new version's tarball. The SHA256 checksum has also been updated to match the new version, ensuring the integrity of the package. Additionally, the build number has been reset from 5 to 0, indicating a fresh build cycle for this version. The other elements of the meta.yaml file, including requirements, test commands, and additional metadata, remain unchanged.

Possibly related PRs

• Update panacus to 0.2.5 #51603: The changes in this PR involve updating the version and SHA256 checksum in the meta.yaml file for the panacus package, similar to the version and checksum updates in the fastp package's meta.yaml.
• Update fastqe to 0.3.3 #51664: This PR updates the version and SHA256 checksum in the meta.yaml file for the fastqe package, which parallels the changes made to the fastp package's meta.yaml.
• Update gencove to 2.24.0 #51849: The update in this PR involves changing the version and SHA256 checksum in the meta.yaml file for the gencove package, reflecting a similar pattern of updates as seen in the fastp package.
• Update gencove to 2.24.1 #51981: This PR updates the version and SHA256 checksum in the meta.yaml file for the gencove package, which is consistent with the changes made in the fastp package's meta.yaml.

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 41713ae and 31a8b18.

📒 Files selected for processing (1)

• recipes/fastp/meta.yaml (1 hunks)

🧰 Additional context used

🪛 yamllint

recipes/fastp/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (4)

recipes/fastp/meta.yaml (4)

1-1: LGTM: Version update follows semantic versioning

The version bump from 0.23.4 to 0.24.0 is properly reflected in the package metadata.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

12-12: LGTM: Build number correctly reset

The build number has been properly reset to 0 for the new version, following conda packaging conventions.

---

Line range hint 1-47: Verify compatibility with runtime dependencies

The version update maintains the same dependencies (isa-l, libdeflate). Let's verify there are no known compatibility issues with these dependencies for fastp 0.24.0.

#!/bin/bash
# Description: Check for any reported issues or breaking changes with dependencies
# Search for dependency-related issues in the release notes and issues
gh issue list -R OpenGene/fastp -S "isa-l libdeflate" -s all
gh release view -R OpenGene/fastp v0.24.0 | grep -i "dependency\|isa-l\|libdeflate"

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

9-9: Verify SHA256 checksum against upstream release

Let's verify the SHA256 checksum matches the official release tarball.

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.