Update PhaBOX to 2.1.5

[KennthShang]

• added new packages accelerate that maybe required on some system.
• fix some bugs in the phabox2 scripts.

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request introduces updates to the meta.yaml file for the PhaBOX package. The version of the package has been incremented from "2.1.4" to "2.1.5". Along with this version change, the SHA256 checksum for the source tarball has been updated to reflect the new version, changing from 963d71ac1e600f5a41cd8ff22a66a34921190e7b8afe449aa5ca3fd10fabba40 to 875124cd1568fcb706662e7f86ff7e1ef79b38944156c8c5d0b1b329d983d73a. Additionally, a new dependency has been added to the run section of the meta.yaml file, specifying accelerate >=1.0.1. The other dependencies listed in the file remain unchanged. These modifications focus on versioning and dependency management without altering the core functionality or structure of the PhaBOX package.

Possibly related PRs

• bump to 2.1 and add missing requirement #51648: This PR updates the meta.yaml file for the PhaBOX package, including a version bump and modifications to dependencies, which is directly related to the changes made in the main PR for the same package.

Suggested labels

autobump, new version

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 259960e and 201613f.

📒 Files selected for processing (1)

• recipes/phabox/meta.yaml (2 hunks)

🔇 Additional comments (3)

recipes/phabox/meta.yaml (3)

45-45: LGTM: Addition of accelerate package is appropriate

The addition of accelerate >=1.0.1 as a dependency is well-justified:

1. It's commonly used with PyTorch (which is already a dependency)
2. Aligns with the PR description mentioning it's required on certain systems
3. The version constraint is reasonable

---

2-2: Verify version tag existence on GitHub

The version has been updated to 2.1.5, which matches the PR description.

Let's verify the version tag exists:

✅ Verification successful

Version tag v2.1.5 exists and is valid

The version update to 2.1.5 is correct and matches an existing tag in the upstream repository. The tag exists and points to commit bc2f4912f8bec651955ebb28b2433541c5989240.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the version tag exists on GitHub
# Expected: Should return the tag information if it exists

gh api \
  -H "Accept: application/vnd.github+json" \
  repos/KennthShang/PhaBOX/git/refs/tags/v2.1.5

Length of output: 527

---

Script:

#!/bin/bash
# Let's try a different approach to verify the tag
gh api \
  -H "Accept: application/vnd.github+json" \
  -H "X-GitHub-Api-Version: 2022-11-28" \
  /repos/KennthShang/PhaBOX/tags | jq '.[] | select(.name == "v2.1.5")'

Length of output: 603

---

10-10: Verify SHA256 checksum of the source tarball

The SHA256 checksum has been updated for the new version.

Let's verify the SHA256 matches the source tarball:

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.

[KennthShang]

@BiocondaBot please add label

[druvus]

@BiocondaBot please fetch artifacts

[BiocondaBot]

Package(s) built are ready for inspection:

Arch	Package	Zip File / Repodata	CI	Instructions
noarch	phabox-2.1.5-pyhdfd78af_0.tar.bz2	noarch.zip	GitHub Actions	show You may also use conda to install after downloading and extracting the zip file. conda install -c ./packages <package name>