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Update gfftk to 24.10.30 #51899

Merged
merged 2 commits into from
Nov 4, 2024
Merged

Update gfftk to 24.10.30 #51899

merged 2 commits into from
Nov 4, 2024

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Update gfftk: 24.2.424.10.30

install with bioconda Conda

Info Link or Description
Recipe recipes/gfftk (click to view/edit other files)
Summary GFFtk: genome annotation GFF3 tool kit
Home https://github.com/nextgenusfs/gfftk
Releases https://pypi.org/pypi/gfftk/json
Recipe Maintainer(s) @nextgenusfs

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Nov 4, 2024
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📥 Commits

Reviewing files that changed from the base of the PR and between 9f4b71f and 7172c91.


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coderabbitai bot commented Nov 4, 2024

📝 Walkthrough

Walkthrough

The pull request involves an update to the meta.yaml file for the gfftk package. The primary changes include an increment in the version number from 24.2.4 to 24.10.30, and an update to the SHA256 checksum for the source tarball, changing it from 053a95204cfcb24b47e0dc23e5983b57cdc0023a37763a4c80a83d7d92598056 to de3ad03d996cf47a910c763e950b7f0889e5b7c483196763d92840fb127b625e. No additional modifications to the structure or content of the meta.yaml file were made, indicating that the changes are strictly related to versioning and checksum validation.

Possibly related PRs

  • Update gget to 0.29.0 #50960: The meta.yaml file for the gget package was updated similarly to the gfftk package, with changes to the version number and SHA256 checksum.
  • Update gencove to 2.23.0 #51404: The meta.yaml file for the gencove package was updated, including changes to the version number and SHA256 checksum, paralleling the updates made in the gfftk package.
  • Update genbank to 0.118 #51442: The meta.yaml file for the genbank package was modified to update the version number and SHA256 checksum, reflecting a similar pattern to the changes in the gfftk package.
  • Update nextflow to 24.10.0 #51691: The meta.yaml file for the nextflow package was updated with a new version number and SHA256 checksum, akin to the updates made in the gfftk package.
  • Update ncbi-stxtyper to 1.0.27 #51808: The meta.yaml file for the ncbi-stxtyper package was updated with a new version number and SHA256 checksum, similar to the changes in the gfftk package.
  • Update gencove to 2.23.1 #51819: The meta.yaml file for the gencove package was updated again, with changes to the version number and SHA256 checksum, continuing the trend seen in the gfftk package.
  • Update gencove to 2.24.0 #51849: The meta.yaml file for the gencove package was updated once more, reflecting changes to the version number and SHA256 checksum, similar to the updates in the gfftk package.
  • Update fgbio-minimal to 2.4.0 #51866: The meta.yaml file for the fgbio-minimal package was updated with a new version number and SHA256 checksum, paralleling the changes made in the gfftk package.
  • Update fgbio to 2.4.0 #51869: The meta.yaml file for the fgbio package was updated with a new version number and SHA256 checksum, reflecting a similar update pattern to the gfftk package.

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between 9f4b71f and 4b54f70.

📒 Files selected for processing (1)
  • recipes/gfftk/meta.yaml (1 hunks)
🔇 Additional comments (3)
recipes/gfftk/meta.yaml (3)

Line range hint 12-24: Build configuration is appropriate for version update.

The package configuration maintains:

  • Correct build number (0) for new version
  • Python compatibility (>=3.6)
  • noarch: python setting
  • Appropriate run_exports pinning
🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


10-10: SHA256 checksum update looks valid.

The new checksum follows the correct format. Let's verify it matches the PyPI source.

#!/bin/bash
# Verify SHA256 checksum matches PyPI source
VERSION="24.10.30"
EXPECTED_SHA="de3ad03d996cf47a910c763e950b7f0889e5b7c483196763d92840fb127b625e"
PYPI_SHA=$(curl -s "https://pypi.org/pypi/gfftk/$VERSION/json" | jq -r '.urls[] | select(.packagetype=="sdist") | .digests.sha256')
echo "Expected SHA256: $EXPECTED_SHA"
echo "PyPI SHA256: $PYPI_SHA"

2-2: Version update looks correct.

The version update to 24.10.30 follows the expected calendar versioning pattern (YY.MM.DD) and matches the PR objectives.

✅ Verification successful

Version 24.10.30 is verified and available on PyPI

The version update to 24.10.30 is confirmed to exist on PyPI, and the SHA256 checksum matches the expected value in the recipe. This validates both the version update and the integrity of the package.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Verify the version exists on PyPI
curl -s "https://pypi.org/pypi/gfftk/json" | jq -r '.releases | has("24.10.30")'

Length of output: 634


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@mencian mencian merged commit 3d46bd0 into master Nov 4, 2024
6 checks passed
@mencian mencian deleted the bump/gfftk branch November 4, 2024 17:45
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