Update jbrowse2 to 2.16.1

[BiocondaBot]

Update jbrowse2: 2.16.0 → 2.16.1

Info	Link or Description
Recipe	recipes/jbrowse2 (click to view/edit other files)
Summary	The JBrowse 2 Genome Browser
Home	https://jbrowse.org/
Releases	https://github.com/GMOD/jbrowse-components/releases
Author	@GMOD

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

The pull request involves an update to the meta.yaml file for the jbrowse2 package. The version number has been incremented from 2.16.0 to 2.16.1. Along with this version update, the SHA256 checksum for the source has been modified to reflect the new version, changing from 5f58748cf7c3dcbaddbf87e123cfa878f0d64d3e965bd2ac9bda1b359db40dfd to b869ab507a765e775dd961d5abfb0b1982dd01b3dd7648d9c3d062c2fab32cfe. Additionally, the source download URL has been updated to point to the new version, changing from https://github.com/GMOD/jbrowse-components/releases/download/v2.16.0/jbrowse-web-v2.16.0.zip to https://github.com/GMOD/jbrowse-components/releases/download/v2.16.1/jbrowse-web-v2.16.1.zip. No other modifications were made to the structure or content of the meta.yaml file.

Possibly related PRs

• Update jbrowse2 to 2.16.0 #51622: This PR updates the jbrowse2 package from version 2.15.4 to 2.16.0, which is directly related to the main PR that updates jbrowse2 from 2.16.0 to 2.16.1. Both PRs involve changes to the same meta.yaml file and are part of a version increment process.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between f4f4918 and 9c18d99.

📒 Files selected for processing (1)

• recipes/jbrowse2/meta.yaml (1 hunks)

🧰 Additional context used

🪛 yamllint

recipes/jbrowse2/meta.yaml

[error] 2-2: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (4)

recipes/jbrowse2/meta.yaml (4)

Line range hint 12-16: Build configuration looks good

The build configuration is appropriate:

• Build number correctly reset to 0 for new version
• noarch: generic is correct for a JavaScript application
• Pinning strategy is properly configured

🧰 Tools

🪛 yamllint

[error] 2-2: syntax error: found character '%' that cannot start any token

(syntax)

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Line range hint 18-25: Dependencies are properly configured

The host and run dependencies are appropriate for a genome browser application and correctly maintained for this version update.

🧰 Tools

🪛 yamllint

[error] 2-2: syntax error: found character '%' that cannot start any token

(syntax)

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9-10: Verify SHA256 checksum against the release artifact

The SHA256 checksum has been updated. Let's verify it matches the official release.

#!/bin/bash
# Download the release and verify checksum
EXPECTED="b869ab507a765e775dd961d5abfb0b1982dd01b3dd7648d9c3d062c2fab32cfe"
VERSION="2.16.1"
URL="https://github.com/GMOD/jbrowse-components/releases/download/v${VERSION}/jbrowse-web-v${VERSION}.zip"

echo "Expected SHA256: ${EXPECTED}"
echo "Release URL: ${URL}"

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1-2: Verify @jbrowse/cli version in build.sh

The version has been correctly updated to 2.16.1. However, as noted in the comment, we should verify the @jbrowse/cli version in build.sh matches this update.

✅ Verification successful

Let me search for any @jbrowse/cli references in the build script with a different approach.

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@jbrowse/cli version is correctly synchronized

The build script correctly uses ${PKG_VERSION} variable which automatically matches the version set in meta.yaml (2.16.1). The CLI installation command npm install --prefix=${PREFIX} -g @jbrowse/cli@${PKG_VERSION} ensures version consistency between the package and its CLI tool.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Check @jbrowse/cli version in build.sh
cat recipes/jbrowse2/build.sh | grep -A 2 "@jbrowse/cli"

Length of output: 585

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Script:

#!/bin/bash
# Search for @jbrowse/cli in build.sh with more context
cat recipes/jbrowse2/build.sh

Length of output: 711

🧰 Tools

🪛 yamllint

[error] 2-2: syntax error: found character '%' that cannot start any token

(syntax)

---

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