Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update PhaBOX to 2.1.4 #51830

Closed
wants to merge 20 commits into from
Closed
Changes from 17 commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
42 changes: 24 additions & 18 deletions recipes/phabox/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,61 +1,67 @@
{% set name = "PhaBOX" %}
{% set version = "2.1.0" %}
{% set version = "2.1.3" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: https://github.com/KennthShang/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
sha256: 0ffe4da03ccc2aac77c17866033ce513f72a5ecdf9df108abbcdbfced438b04c
url: https://github.com/KennthShang/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
sha256: b3e342571c7344a22913d6d2f50a2c4b44682c9de1f13a6684d08df19f8ccf36

build:
number: 0
noarch: python
script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
entry_points:
- phabox2 = phabox2.phabox2:main
- phabox2=phabox2.phabox2:main
run_exports:
- {{ pin_subpackage('phabox', max_pin="x.x") }}

requirements:
host:
- python >=3.10
- pip
- python >=3.8
- setuptools
run:
- python >=3.8
- biopython >=1.84
- datasets >=3
- python >=3.10
- biopython >=1.84
- datasets
- kcounter >=0.1.1
- fasttree >=2.1.11
- mafft >=7.525
- networkx >=3.4
- numpy >=1.26
- pandas >=2
- networkx >=3.4.2
- numpy >=1.26.4
- pandas >=2.2.3
- prodigal-gv >=2.11.0
- pyarrow >=16
- pytorch >=2.4
- scipy >=1.14
- pytorch
- scipy >=1.14.1
KennthShang marked this conversation as resolved.
Show resolved Hide resolved
- seaborn-base >=0.13.2
- transformers >=4
- transformers
- diamond <=0.9.14
KennthShang marked this conversation as resolved.
Show resolved Hide resolved
KennthShang marked this conversation as resolved.
Show resolved Hide resolved
- blast >=2.16.0
- mcl >=22.282
- tqdm >=4.66.5
- triton
- accelerate

test:
commands:
- phabox2 --help

about:
home: "https://phage.ee.cityu.edu.hk"
home: https://github.com/KennthShang/PhaBOX
license: "AFL-3.0"
license_family: OTHER
license_file: "LICENSE.md"
summary: "Phage BOX is a Python library for phage-related tasks."
summary: Virus identification and analysis tool set
dev_url: "https://github.com/KennthShang/PhaBOX"
doc_url: "https://github.com/KennthShang/PhaBOX/wiki"

extra:
recipe-maintainers:
- bernt-matthias
- SHANG Jiayu
- PENG Cheng
identifiers:
- doi:10.1093/bioadv/vbad101
- biotools:phabox
Loading