Update meta.yaml

recipes/phabox/meta.yaml

@@ -20,25 +20,284 @@ build:
 
 requirements:
   host:
-    - pip
     - python >=3.8
     - setuptools
   run:
-    - python >=3.8
-    - biopython >=1.84
-    - datasets >=3
-    - kcounter >=0.1.1
-    - fasttree >=2.1.11
-    - mafft >=7.525
-    - networkx >=3.4
-    - numpy >=1.26
-    - pandas >=2
-    - prodigal-gv >=2.11.0
-    - pyarrow >=16
-    - pytorch >=2.4
-    - scipy >=1.14
-    - seaborn-base >=0.13.2
-    - transformers >=4
+  - _libgcc_mutex=0.1=conda_forge
+  - _openmp_mutex=4.5=2_kmp_llvm
+  - accelerate=1.0.1=pyhd8ed1ab_0
+  - aiohappyeyeballs=2.4.3=pyhd8ed1ab_0
+  - aiohttp=3.10.10=py310h89163eb_0
+  - aiosignal=1.3.1=pyhd8ed1ab_0
+  - async-timeout=4.0.3=pyhd8ed1ab_0
+  - attrs=24.2.0=pyh71513ae_0
+  - aws-c-auth=0.7.22=h96bc93b_2
+  - aws-c-cal=0.6.14=h88a6e22_1
+  - aws-c-common=0.9.19=h4ab18f5_0
+  - aws-c-compression=0.2.18=h83b837d_6
+  - aws-c-event-stream=0.4.2=ha47c788_12
+  - aws-c-http=0.8.1=h29d6fba_17
+  - aws-c-io=0.14.8=h21d4f22_5
+  - aws-c-mqtt=0.10.4=h759edc4_4
+  - aws-c-s3=0.5.9=h594631b_3
+  - aws-c-sdkutils=0.1.16=h83b837d_2
+  - aws-checksums=0.1.18=h83b837d_6
+  - aws-crt-cpp=0.26.9=he3a8b3b_0
+  - aws-sdk-cpp=1.11.329=hba8bd5f_3
+  - azure-core-cpp=1.13.0=h935415a_0
+  - azure-identity-cpp=1.9.0=hd126650_0
+  - azure-storage-blobs-cpp=12.13.0=h1d30c4a_0
+  - azure-storage-common-cpp=12.8.0=ha3822c6_0
+  - azure-storage-files-datalake-cpp=12.12.0=h0f25b8a_0
+  - biopython=1.84=py310hc51659f_0
+  - blast=2.16.0=hc155240_2
+  - brotli=1.1.0=hb9d3cd8_2
+  - brotli-bin=1.1.0=hb9d3cd8_2
+  - brotli-python=1.1.0=py310hf71b8c6_2
+  - bzip2=1.0.8=h4bc722e_7
+  - c-ares=1.32.3=h4bc722e_0
+  - ca-certificates=2024.8.30=hbcca054_0
+  - certifi=2024.8.30=pyhd8ed1ab_0
+  - cffi=1.17.1=py310h8deb56e_0
+  - charset-normalizer=3.4.0=pyhd8ed1ab_0
+  - click=8.1.7=unix_pyh707e725_0
+  - colorama=0.4.6=pyhd8ed1ab_0
+  - contourpy=1.3.0=py310h3788b33_2
+  - cpython=3.10.15=py310hd8ed1ab_2
+  - cuda-version=11.8=h70ddcb2_3
+  - cudatoolkit=11.8.0=h4ba93d1_13
+  - cudnn=8.9.7.29=hbc23b4c_3
+  - curl=8.9.1=hdbd6064_0
+  - cycler=0.12.1=pyhd8ed1ab_0
+  - dataclasses=0.8=pyhc8e2a94_3
+  - datasets=3.0.2=pyhd8ed1ab_0
+  - dbus=1.13.18=hb2f20db_0
+  - diamond=0.9.14=h2e03b76_4
+  - dill=0.3.8=pyhd8ed1ab_0
+  - entrez-direct=22.4=he881be0_0
+  - expat=2.6.3=h5888daf_0
+  - fasttree=2.1.11=h031d066_4
+  - filelock=3.16.1=pyhd8ed1ab_0
+  - fontconfig=2.14.1=h55d465d_3
+  - fonttools=4.54.1=py310h89163eb_1
+  - freetype=2.12.1=h267a509_2
+  - frozenlist=1.5.0=py310ha75aee5_0
+  - fsspec=2024.9.0=pyhff2d567_0
+  - gawk=5.3.1=hcd3d067_0
+  - gettext=0.22.5=he02047a_3
+  - gettext-tools=0.22.5=he02047a_3
+  - gflags=2.2.2=h5888daf_1005
+  - glib=2.80.2=hf974151_0
+  - glib-tools=2.80.2=hb6ce0ca_0
+  - glog=0.7.1=hbabe93e_0
+  - gmp=6.3.0=hac33072_2
+  - gmpy2=2.1.5=py310he8512ff_2
+  - gst-plugins-base=1.14.1=h6a678d5_1
+  - gstreamer=1.14.1=h5eee18b_1
+  - h2=4.1.0=pyhd8ed1ab_0
+  - hpack=4.0.0=pyh9f0ad1d_0
+  - huggingface_hub=0.26.1=pyh0610db2_0
+  - hyperframe=6.0.1=pyhd8ed1ab_0
+  - icu=73.2=h59595ed_0
+  - idna=3.10=pyhd8ed1ab_0
+  - jinja2=3.1.4=pyhd8ed1ab_0
+  - joblib=1.4.2=pyhd8ed1ab_0
+  - jpeg=9e=h0b41bf4_3
+  - kcounter=0.1.1=py310h4b81fae_4
+  - kernel-headers_linux-64=3.10.0=he073ed8_17
+  - keyutils=1.6.1=h166bdaf_0
+  - kiwisolver=1.4.7=py310h3788b33_0
+  - krb5=1.20.1=h81ceb04_0
+  - lcms2=2.12=hddcbb42_0
+  - ld_impl_linux-64=2.43=h712a8e2_2
+  - lerc=3.0=h9c3ff4c_0
+  - libabseil=20240116.2=cxx17_he02047a_1
+  - libarrow=16.1.0=hcb6531f_6_cpu
+  - libarrow-acero=16.1.0=hac33072_6_cpu
+  - libarrow-dataset=16.1.0=hac33072_6_cpu
+  - libarrow-substrait=16.1.0=h7e0c224_6_cpu
+  - libasprintf=0.22.5=he8f35ee_3
+  - libasprintf-devel=0.22.5=he8f35ee_3
+  - libblas=3.9.0=25_linux64_openblas
+  - libbrotlicommon=1.1.0=hb9d3cd8_2
+  - libbrotlidec=1.1.0=hb9d3cd8_2
+  - libbrotlienc=1.1.0=hb9d3cd8_2
+  - libcblas=3.9.0=25_linux64_openblas
+  - libclang=14.0.6=default_h7634d5b_1
+  - libclang13=14.0.6=default_h9986a30_1
+  - libcrc32c=1.1.2=h9c3ff4c_0
+  - libcups=2.3.3=h36d4200_3
+  - libcurl=8.9.1=h251f7ec_0
+  - libdeflate=1.10=h7f98852_0
+  - libedit=3.1.20191231=he28a2e2_2
+  - libev=4.33=hd590300_2
+  - libevent=2.1.12=hf998b51_1
+  - libexpat=2.6.3=h5888daf_0
+  - libffi=3.4.2=h7f98852_5
+  - libgcc=14.2.0=h77fa898_1
+  - libgcc-ng=14.2.0=h69a702a_1
+  - libgettextpo=0.22.5=he02047a_3
+  - libgettextpo-devel=0.22.5=he02047a_3
+  - libgfortran=14.2.0=h69a702a_1
+  - libgfortran-ng=14.2.0=h69a702a_1
+  - libgfortran5=14.2.0=hd5240d6_1
+  - libglib=2.80.2=hf974151_0
+  - libgomp=14.2.0=h77fa898_1
+  - libgoogle-cloud=2.24.0=h2736e30_0
+  - libgoogle-cloud-storage=2.24.0=h3d9a0c8_0
+  - libgrpc=1.62.2=h15f2491_0
+  - libhwloc=2.11.1=default_hecaa2ac_1000
+  - libiconv=1.17=hd590300_2
+  - libidn2=2.3.7=hd590300_0
+  - liblapack=3.9.0=25_linux64_openblas
+  - libllvm14=14.0.6=hcd5def8_4
+  - libmagma=2.8.0=hfdb99dd_0
+  - libmagma_sparse=2.8.0=h9ddd185_0
+  - libmlir14=14.0.6=he0ac6c6_0
+  - libnghttp2=1.58.0=h47da74e_1
+  - libnsl=2.0.1=hd590300_0
+  - libopenblas=0.3.28=pthreads_h94d23a6_0
+  - libparquet=16.1.0=h6a7eafb_6_cpu
+  - libpng=1.6.43=h2797004_0
+  - libpq=12.17=hdbd6064_0
+  - libprotobuf=4.25.3=h08a7969_0
+  - libre2-11=2023.09.01=h5a48ba9_2
+  - libsqlite=3.46.0=hde9e2c9_0
+  - libssh2=1.11.0=h0841786_0
+  - libstdcxx=14.2.0=hc0a3c3a_1
+  - libstdcxx-ng=14.2.0=h4852527_1
+  - libthrift=0.19.0=hb90f79a_1
+  - libtiff=4.3.0=h0fcbabc_4
+  - libtorch=2.4.0=cuda118_h8db9d67_301
+  - libunistring=0.9.10=h7f98852_0
+  - libutf8proc=2.8.0=h166bdaf_0
+  - libuuid=1.41.5=h5eee18b_0
+  - libuv=1.49.2=hb9d3cd8_0
+  - libwebp-base=1.4.0=hd590300_0
+  - libxcb=1.17.0=h8a09558_0
+  - libxcrypt=4.4.36=hd590300_1
+  - libxkbcommon=1.7.0=h2c5496b_1
+  - libxml2=2.13.1=hfdd30dd_2
+  - libzlib=1.2.13=h4ab18f5_6
+  - lit=19.1.2=pyhd8ed1ab_0
+  - llvm-openmp=19.1.2=h024ca30_0
+  - lz4-c=1.9.4=hcb278e6_0
+  - mafft=7.525=h031d066_1
+  - markupsafe=3.0.2=py310h89163eb_0
+  - matplotlib=3.9.1=py310hff52083_1
+  - matplotlib-base=3.9.1=py310hf02ac8c_2
+  - mcl=22.282=pl5321h031d066_2
+  - mkl=2023.2.0=h84fe81f_50496
+  - mpc=1.3.1=h24ddda3_1
+  - mpfr=4.2.1=h90cbb55_3
+  - mpmath=1.3.0=pyhd8ed1ab_0
+  - multidict=6.1.0=py310h89163eb_1
+  - multiprocess=0.70.16=py310ha75aee5_1
+  - munkres=1.0.7=py_1
+  - mysql=5.7.20=hf484d3e_1001
+  - ncbi-vdb=3.1.1=h4ac6f70_2
+  - nccl=2.23.4.1=h03a54cd_1
+  - ncurses=6.5=he02047a_1
+  - networkx=3.4.2=pyhd8ed1ab_0
+  - numpy=1.26.4=py310hb13e2d6_0
+  - olefile=0.47=pyhd8ed1ab_0
+  - openjpeg=2.5.0=h7d73246_0
+  - openssl=3.3.2=hb9d3cd8_0
+  - orc=2.0.1=h17fec99_1
+  - packaging=24.1=pyhd8ed1ab_0
+  - pandas=2.2.3=py310h5eaa309_1
+  - patsy=0.5.6=pyhd8ed1ab_0
+  - pcre2=10.43=hcad00b1_0
+  - perl=5.32.1=7_hd590300_perl5
+  - perl-archive-tar=2.40=pl5321hdfd78af_0
+  - perl-carp=1.38=pl5321hdfd78af_4
+  - perl-common-sense=3.75=pl5321hdfd78af_0
+  - perl-compress-raw-bzip2=2.201=pl5321h87f3376_1
+  - perl-compress-raw-zlib=2.105=pl5321h87f3376_0
+  - perl-encode=3.19=pl5321hec16e2b_1
+  - perl-exporter=5.72=pl5321hdfd78af_2
+  - perl-exporter-tiny=1.002002=pl5321hdfd78af_0
+  - perl-extutils-makemaker=7.70=pl5321hd8ed1ab_0
+  - perl-io-compress=2.201=pl5321hdbdd923_2
+  - perl-io-zlib=1.14=pl5321hdfd78af_0
+  - perl-json=4.10=pl5321hdfd78af_1
+  - perl-json-xs=4.03=pl5321h4ac6f70_3
+  - perl-list-moreutils=0.430=pl5321hdfd78af_0
+  - perl-list-moreutils-xs=0.430=pl5321h031d066_2
+  - perl-parent=0.236=pl5321hdfd78af_2
+  - perl-pathtools=3.75=pl5321hec16e2b_3
+  - perl-scalar-list-utils=1.62=pl5321hec16e2b_1
+  - perl-types-serialiser=1.01=pl5321hdfd78af_0
+  - pillow=8.4.0=py310h07f4688_0
+  - pip=24.2=pyh8b19718_1
+  - prodigal-gv=2.11.0=he4a0461_2
+  - propcache=0.2.0=py310ha75aee5_2
+  - psutil=6.0.0=py310ha75aee5_2
+  - pthread-stubs=0.4=hb9d3cd8_1002
+  - pyarrow=16.1.0=py310h17c5347_1
+  - pyarrow-core=16.1.0=py310h6f79a3a_1_cpu
+  - pycparser=2.22=pyhd8ed1ab_0
+  - pyparsing=3.2.0=pyhd8ed1ab_1
+  - pyqt=5.15.4=py310hd8f1fbe_0
+  - pyqt5-sip=12.9.0=py310hd8f1fbe_0
+  - pysocks=1.7.1=pyha2e5f31_6
+  - python=3.10.15=he870216_1
+  - python-dateutil=2.9.0=pyhd8ed1ab_0
+  - python-tzdata=2024.2=pyhd8ed1ab_0
+  - python-xxhash=3.5.0=py310ha75aee5_1
+  - python_abi=3.10=2_cp310
+  - pytorch=2.4.0=cuda118_py310h954aa82_301
+  - pytz=2024.1=pyhd8ed1ab_0
+  - pyyaml=6.0.2=py310ha75aee5_1
+  - qhull=2020.2=h434a139_5
+  - qt-main=5.15.2=h53bd1ea_10
+  - re2=2023.09.01=h7f4b329_2
+  - readline=8.2=h8228510_1
+  - regex=2024.9.11=py310ha75aee5_0
+  - requests=2.32.3=pyhd8ed1ab_0
+  - rpsbproc=0.5.0=h6a68c12_0
+  - s2n=1.4.15=he19d79f_0
+  - sacremoses=0.0.53=pyhd8ed1ab_0
+  - safetensors=0.4.5=py310h505e2c1_0
+  - scipy=1.14.1=py310hfcf56fc_1
+  - seaborn=0.13.2=hd8ed1ab_2
+  - seaborn-base=0.13.2=pyhd8ed1ab_2
+  - setuptools=75.1.0=pyhd8ed1ab_0
+  - sip=6.5.1=py310h122e73d_2
+  - six=1.16.0=pyh6c4a22f_0
+  - sleef=3.7=h1b44611_0
+  - snappy=1.2.1=ha2e4443_0
+  - sqlite=3.46.0=h6d4b2fc_0
+  - statsmodels=0.14.4=py310hf462985_0
+  - sympy=1.13.3=pyh2585a3b_104
+  - sysroot_linux-64=2.17=h4a8ded7_17
+  - tbb=2021.13.0=h84d6215_0
+  - tk=8.6.14=h39e8969_0
+  - tokenizers=0.10.3=py310hb317417_1
+  - toml=0.10.2=pyhd8ed1ab_0
+  - tornado=6.4.1=py310ha75aee5_1
+  - tqdm=4.66.5=pyhd8ed1ab_0
+  - transformers=4.11.3=pyhd8ed1ab_0
+  - triton=2.0.0=cuda112py310hb224420_4
+  - typing-extensions=4.12.2=hd8ed1ab_0
+  - typing_extensions=4.12.2=pyha770c72_0
+  - tzdata=2024b=hc8b5060_0
+  - unicodedata2=15.1.0=py310ha75aee5_1
+  - urllib3=2.2.3=pyhd8ed1ab_0
+  - wget=1.21.4=hda4d442_0
+  - wheel=0.44.0=pyhd8ed1ab_0
+  - xkeyboard-config=2.43=hb9d3cd8_0
+  - xorg-libx11=1.8.10=h4f16b4b_0
+  - xorg-libxau=1.0.11=hb9d3cd8_1
+  - xorg-libxdmcp=1.1.5=hb9d3cd8_0
+  - xorg-xorgproto=2024.1=hb9d3cd8_1
+  - xxhash=0.8.2=hd590300_0
+  - xz=5.4.6=h5eee18b_1
+  - yaml=0.2.5=h7f98852_2
+  - yarl=1.15.5=py310ha75aee5_0
+  - zlib=1.2.13=h4ab18f5_6
+  - zstandard=0.23.0=py310ha39cb0e_1
+  - zstd=1.5.6=ha6fb4c9_0
 
 test:
   commands: