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Fix pgscatalog-utils patch update 1.4.2 #51608

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merged 2 commits into from
Oct 24, 2024

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@nebfield nebfield commented Oct 23, 2024

pip check was failing on the autobump

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@nebfield nebfield marked this pull request as ready for review October 24, 2024 08:55
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@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Oct 24, 2024
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coderabbitai bot commented Oct 24, 2024

📝 Walkthrough

Walkthrough

The pull request introduces updates to the meta.yaml file for the pgscatalog-utils package. Key changes include an increment in the version number from 1.4.1 to 1.4.2, along with an updated SHA256 checksum for the source tarball, indicating modifications to the package's contents. The build number has been adjusted from 1 to 0. Additionally, the version constraint for the pgscatalog.core dependency has been revised from >=0.3.1,<0.4.0 to >=0.3.2,<0.4.0, reflecting an increase in the required version of this dependency. All other sections of the meta.yaml file, such as the package name, source URL, build script, test commands, and metadata, remain unchanged.

Possibly related PRs

  • Update pgscatalog-utils to 1.4.0 #51234: This PR updates the pgscatalog-utils package to version 1.4.0, which is directly related to the main PR that updates the same package to version 1.4.2.
  • Fix pgscatalog-utils 1.4.1 #51256: This PR also updates the pgscatalog-utils package, specifically from 1.4.0 to 1.4.1, indicating a close relationship with the main PR's changes.

Suggested labels

please review & merge

Suggested reviewers

  • martin-g
  • AndreaGuarracino

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 05f6c3f and f914cf1.

📒 Files selected for processing (1)
  • recipes/pgscatalog-utils/meta.yaml (2 hunks)
🔇 Additional comments (3)
recipes/pgscatalog-utils/meta.yaml (3)

2-2: LGTM: Version bump and checksum update look correct.

The version bump to 1.4.2 and corresponding SHA256 checksum update are properly synchronized.

Also applies to: 10-10


15-15: LGTM: Build number correctly reset.

Build number has been appropriately reset to 0 following the version bump.


27-27: Verify if this dependency update resolves the pip check failure.

The minimum version requirement for pgscatalog.core has been increased from >=0.3.1 to >=0.3.2, which should address the pip check failure mentioned in the PR description.

Let's verify if there are any other potential dependency conflicts:

✅ Verification successful

Let me check the dependencies in the related packages to verify if there are any potential conflicts.


The dependency update appears compatible with related packages

The verification shows that both related packages (pgscatalog.match and pgscatalog.calc) specify pgscatalog.core >=0.3.0,<0.4.0 as their dependency requirement. The updated version requirement in pgscatalog-utils (>=0.3.2,<0.4.0) is fully compatible with these constraints, as it falls within their allowed version range. This update should resolve the pip check failure without introducing new dependency conflicts.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check for any other potential dependency conflicts in related packages

# Look for other packages that depend on pgscatalog.core
rg -l "pgscatalog[.]core.*[0-9]" --type yaml

# Look for any other packages that might be affected by this update
rg -l "pgscatalog-utils.*[0-9]" --type yaml

Length of output: 196


Script:

#!/bin/bash
# Check the dependency specifications in the related packages
echo "=== pgscatalog.match dependencies ==="
cat recipes/pgscatalog.match/meta.yaml

echo -e "\n=== pgscatalog.calc dependencies ==="
cat recipes/pgscatalog.calc/meta.yaml

Length of output: 2951


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@martin-g martin-g merged commit 3ba572a into bioconda:master Oct 24, 2024
7 checks passed
@nebfield nebfield deleted the fix-catalog-utils branch October 24, 2024 11:09
@coderabbitai coderabbitai bot mentioned this pull request Nov 7, 2024
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