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Update fastq-dl to 3.0.0 #51506

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merged 6 commits into from
Oct 21, 2024
Merged

Update fastq-dl to 3.0.0 #51506

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55a6263
Update fastq-dl to 3.0.0
BiocondaBot Oct 20, 2024
6fff7f0
Update `fastq-dl` recipe
apcamargo Oct 20, 2024
446247c
Add non-Python dependencies
apcamargo Oct 20, 2024
7336b63
update depends, exclude depends of depends
rpetit3 Oct 20, 2024
5576d3c
add to maintainers
rpetit3 Oct 20, 2024
934176a
Update meta.yaml
rpetit3 Oct 21, 2024
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24 changes: 15 additions & 9 deletions recipes/fastq-dl/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,30 +1,32 @@
{% set version = "2.0.4" %}
{% set name = "fastq-dl" %}
{% set version = "3.0.0" %}
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package:
name: fastq-dl
name: {{ name }}
version: {{ version }}

source:
url: https://pypi.io/packages/source/f/fastq_dl/fastq_dl-{{ version }}.tar.gz
sha256: 201a75f7e7b08d1eb56c625c98f92ad39e9e683e1921bb60a24a38a158a2daa8
sha256: de85e3fcc60c2f2fb9313336df9706add440b0f89963f28a46fa75e5ff041a0a

build:
number: 0
noarch: python
script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
entry_points:
- fastq-dl = fastq_dl.fastq_dl:main
script: "{{ PYTHON }} -m pip install . -vv"
- fastq-dl = fastq_dl.cli.download:main
run_exports:
- {{ pin_subpackage(name, max_pin="x.x") }}

requirements:
host:
- python >=3.7
- poetry =1.3
- python >=3.9
- poetry-core
- pip

run:
- executor
- pigz
- python >=3.7
- python >=3.9
- pysradb >=1.4
- requests
- rich-click >=1.6.0
Expand All @@ -43,3 +45,7 @@ about:
license: MIT
license_file: LICENSE
summary: A tool to download FASTQs associated with Study, Experiment, or Run accessions.

extra:
recipe-maintainers:
- rpetit3