Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update pybbi to 0.4.1 #51483

Merged
merged 1 commit into from
Oct 18, 2024
Merged

Update pybbi to 0.4.1 #51483

merged 1 commit into from
Oct 18, 2024

Conversation

BiocondaBot
Copy link
Collaborator

Update pybbi: 0.4.00.4.1

install with bioconda Conda

Info Link or Description
Recipe recipes/pybbi (click to view/edit other files)
Summary Python bindings to UCSC Big Binary (bigWig/bigBed) file library
Home https://github.com/nvictus/pybbi
Releases https://pypi.org/pypi/pybbi/json
Recipe Maintainer(s) @Nanguage

This pull request was automatically generated (see docs).

@BiocondaBot BiocondaBot added autobump Automatic Version Update new version labels Oct 18, 2024
Copy link
Contributor

coderabbitai bot commented Oct 18, 2024

📝 Walkthrough

Walkthrough

The pull request involves an update to the meta.yaml file for the pybbi package. The version number has been incremented from 0.4.0 to 0.4.1. Along with this version change, the SHA256 checksum for the source package has been updated from afafbc23f16f789344a454fce619af5556a67a2e11b7c36de8fc6f091e2478fc to 6a193dcd0d4d4575c258d6cd5d2d7c5368a5cf58e939d8faae9f8fe192373a5c. Additionally, the build number has been modified from 1 to 0. The remaining contents of the meta.yaml file, including package requirements and metadata, have not undergone any changes.

Possibly related PRs

  • Update ont-modkit to 0.4.1 #51025: This PR updates the ont-modkit package from version 0.4.0 to 0.4.1, similar to the main PR which updates the pybbi package from 0.4.0 to 0.4.1, indicating a version increment in both cases.
  • Update biobb_cmip to 5.0.0 #51455: This PR updates the biobb_cmip package from version 4.2.0 to 5.0.0, which, while a different package, also reflects a version increment similar to the main PR's update of pybbi from 0.4.0 to 0.4.1.

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between c8e118e and 48ffdfa.

📒 Files selected for processing (1)
  • recipes/pybbi/meta.yaml (1 hunks)
🧰 Additional context used
🔇 Additional comments (4)
recipes/pybbi/meta.yaml (4)

2-2: Version update looks good.

The version has been correctly updated to 0.4.1, which aligns with the PR objective.


13-13: Build number reset is correct.

The build number has been appropriately reset to 0 for the new version. This is consistent with conda-forge best practices when updating to a new upstream version.


10-10: SHA256 checksum update looks correct.

The SHA256 checksum has been updated, which is expected when updating to a new version of the package. However, it's crucial to verify that this checksum corresponds to the correct source package for pybbi 0.4.1.

To verify the checksum, you can run the following script:

#!/bin/bash
# Description: Verify the SHA256 checksum of the pybbi 0.4.1 source package

# Download the package
curl -L -o pybbi-0.4.1.tar.gz https://pypi.io/packages/source/p/pybbi/pybbi-0.4.1.tar.gz

# Calculate and compare the SHA256 checksum
echo "6a193dcd0d4d4575c258d6cd5d2d7c5368a5cf58e939d8faae9f8fe192373a5c pybbi-0.4.1.tar.gz" | sha256sum -c -

# Clean up
rm pybbi-0.4.1.tar.gz

Line range hint 1-54: Consider verifying package dependencies.

While the version update looks good, it might be worth verifying that all package dependencies are still up-to-date and compatible with pybbi 0.4.1. This includes both build and run dependencies.

To check for any dependency changes in the new version, you can run:

🧰 Tools
🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)


Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

  • @coderabbitai pause to pause the reviews on a PR.
  • @coderabbitai resume to resume the paused reviews.
  • @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
  • @coderabbitai full review to do a full review from scratch and review all the files again.
  • @coderabbitai summary to regenerate the summary of the PR.
  • @coderabbitai resolve resolve all the CodeRabbit review comments.
  • @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
  • @coderabbitai help to get help.

Other keywords and placeholders

  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@mencian mencian merged commit 9e3c735 into master Oct 18, 2024
7 checks passed
@mencian mencian deleted the bump/pybbi branch October 18, 2024 21:02
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
autobump Automatic Version Update new version
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants