Update easypqp to 0.1.50

[BiocondaBot]

Update easypqp: 0.1.49 → 0.1.50

Info	Link or Description
Recipe	recipes/easypqp (click to view/edit other files)
Summary	EasyPQP: Simple library generation for OpenSWATH
Home	https://pypi.org/project/easypqp/
Releases	https://pypi.org/pypi/easypqp/json

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This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

This pull request introduces changes to the meta.yaml file for the easypqp package. The version of the package has been updated from 0.1.49 to 0.1.50, reflecting a new release. Alongside this version increment, the SHA256 checksum has been modified to a new value, ensuring the integrity of the package. Additionally, the setuptools package has been included in the host requirements, indicating a potential change in the build or installation process. The overall structure of the meta.yaml file remains unchanged, with no other sections affected apart from the specified updates.

Possibly related PRs

• Update metabolabpy to 0.9.50 #50998: Updates the version and SHA256 checksum in the meta.yaml file for the easypqp package.
• Update metabolabpy to 0.9.53 #51094: Similar updates to the version and SHA256 checksum in the meta.yaml file for the metabolabpy package.
• Update pcaone to 0.4.6 #51130: Involves version and SHA256 checksum updates in the meta.yaml file for the pcaone package.
• Update pcaone to 0.4.7 #51296: Updates the version and SHA256 checksum in the meta.yaml file for the pcaone package.
• Update metabolights-utils to 1.2.1 #51403: Aligns with the changes made in the main PR by updating the version and SHA256 checksum in the meta.yaml file for metabolights-utils.

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between 65f8c99 and 948c833.

📒 Files selected for processing (1)

• recipes/easypqp/meta.yaml (2 hunks)

🧰 Additional context used

🔇 Additional comments (4)

recipes/easypqp/meta.yaml (4)

2-2: Version update looks good.

The version has been correctly updated from 0.1.49 to 0.1.50, which aligns with the PR objectives.

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Line range hint 1-78: Overall structure and content of meta.yaml look good.

The meta.yaml file adheres to Conda packaging best practices. The build number is correctly set to 0 for the new version, and the package is appropriately set as noarch: python. The run requirements seem comprehensive and suitable for a bioinformatics tool like easypqp.

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3-3: SHA256 update looks correct, but needs verification.

The SHA256 checksum has been updated, which is necessary for the new package version. However, it's crucial to verify that this checksum corresponds to the correct package version (0.1.50) to ensure package integrity.

To verify the SHA256 checksum, please run the following script:

#!/bin/bash
# Description: Verify the SHA256 checksum of the easypqp package

# Download the package
curl -L https://pypi.io/packages/source/e/easypqp/easypqp-0.1.50.tar.gz -o easypqp-0.1.50.tar.gz

# Calculate and compare SHA256
calculated_sha256=$(sha256sum easypqp-0.1.50.tar.gz | awk '{print $1}')
expected_sha256="d3ebc1c7cbe61f081c5ab71e76e7130aa7fae955895ffe8f719363b29870a000"

if [ "$calculated_sha256" = "$expected_sha256" ]; then
    echo "SHA256 checksum verified successfully."
else
    echo "SHA256 checksum verification failed."
    echo "Calculated: $calculated_sha256"
    echo "Expected:   $expected_sha256"
fi

# Clean up
rm easypqp-0.1.50.tar.gz

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26-26: Addition of setuptools to host requirements needs clarification.

The addition of setuptools to the host requirements is noted. This change suggests a modification in the build or installation process of the package.

Could you please provide more information on why setuptools is now required? This will help ensure that the change doesn't introduce any unexpected behavior or compatibility issues.

To verify if setuptools is indeed required, please run the following script:

This script will help determine if setuptools is explicitly imported or used in the package, which would justify its addition to the host requirements.

✅ Verification successful

Addition of setuptools to host requirements approved.

The usage of setuptools has been confirmed across multiple recipe files, ensuring that its addition to the host requirements is necessary for the build and installation processes.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Check if setuptools is imported or used in the package

# Clone the repository (assuming it's on GitHub)
git clone https://github.com/grosenberger/easypqp.git
cd easypqp

# Check for imports of setuptools
echo "Checking for setuptools imports:"
grep -R "import setuptools" .
grep -R "from setuptools" .

# Check for setup.py file
echo "Checking for setup.py:"
if [ -f "setup.py" ]; then
    echo "setup.py found. Checking its contents:"
    cat setup.py
else
    echo "setup.py not found."
fi

# Clean up
cd ..
rm -rf easypqp

Length of output: 712

---

Script:

#!/bin/bash
# Description: Check if setuptools is imported or used in the package

# Ensure we are in the repository root
cd "$(git rev-parse --show-toplevel)" || exit 1

# Check for imports of setuptools
echo "Checking for setuptools imports:"
grep -R "import setuptools" .
grep -R "from setuptools" .

# Check for setup.py file
echo "Checking for setup.py:"
if [ -f "setup.py" ]; then
    echo "setup.py found. Checking its contents for setuptools usage:"
    grep "setuptools" setup.py
else
    echo "setup.py not found."
fi

# Check for pyproject.toml file
echo "Checking for pyproject.toml:"
if [ -f "pyproject.toml" ]; then
    echo "pyproject.toml found. Checking for setuptools in build-system:"
    grep "setuptools" pyproject.toml
else
    echo "pyproject.toml not found."
fi

Length of output: 5242

---

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