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Add zamp #51309

Merged
merged 9 commits into from
Oct 22, 2024
Merged
54 changes: 54 additions & 0 deletions recipes/zamp/meta.yaml
Original file line number Diff line number Diff line change
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{% set name = "zamp" %}
{% set version = "1.0.0" %}

package:
name: {{ name }}
version: {{ version }}

source:
url: https://github.com/metagenlab/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
sha256: 366d1a1bdff60e1a8100298608f20ab2294ef476a1da1bee9c1975641c495f6e

build:
number: 0
noarch: python
entry_points:
- zamp=zamp.__main__:main
script: {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv
run_exports:
- {{ pin_subpackage('zamp', max_pin="x") }}

requirements:
host:
- python >=3.11
- pip
- setuptools
run:
- python >=3.11
- snakemake-minimal >=8.0.0
- Click >=8.1.3
- attrmap >=0.0.7
- snaketool-utils >=0.0.5
- metasnek >=0.0.8
- biopython >=1.83
- pandas >=2.2.1
- apptainer >=1.3.2

test:
commands:
- zamp -h
- zamp -v

about:
home: https://github.com/metagenlab/zAMP/
license: MIT
summary: 'zAMP: bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics'
license_family: MIT
license_file: LICENSE

extra:
container:
extended-base: true
recipe-maintainers:
- farchaab
- vicasze