Update snakedeploy to 0.10.1

[BiocondaBot]

Update snakedeploy: 0.10.0 → 0.10.1

Info	Link or Description
Recipe	recipes/snakedeploy (click to view/edit other files)
Summary	Helper for deploying published Snakemake pipelines
Home	https://github.com/snakemake/snakedeploy
Releases	https://pypi.org/pypi/snakedeploy/json
Recipe Maintainer(s)	@johanneskoester

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

📝 Walkthrough

Walkthrough

This pull request introduces modifications to the meta.yaml file for the snakedeploy package. The primary changes include an increment in the version number from "0.10.0" to "0.10.1". The source URL has been updated to reflect the new version, changing from snakedeploy-0.10.0.tar.gz to snakedeploy-0.10.1.tar.gz. Additionally, the SHA256 checksum has been revised to ensure integrity, updating from 85922677897e90e3d179e74ba41f28e174084ed184d4e2712a4c0be3890c6279 to 27e14f682488d5017d52aeb6253005a51ef006b913dcb5fac217eeff70ca0c24. The installation script has been modified to include the --no-cache-dir option. Furthermore, the requirements section has been updated to include setuptools in the run requirements. A period has been added to the summary in the about section, and a new dev_url field has been added, pointing to the GitHub repository. Other sections remain unchanged.

Possibly related PRs

• Update snakemake-interface-executor-plugins to 9.3.1 #51166: Updates the meta.yaml file for the snakemake-interface-executor-plugins package with a version bump and the addition of the --no-cache-dir option in the installation script.
• Update snakemake-interface-executor-plugins to 9.3.2 #51180: Reflects a version increment and the addition of the --no-cache-dir option in the meta.yaml file for the snakemake-interface-executor-plugins package.
• Update snakemake to 8.20.6 #51219: Modifies the meta.yaml file for the snakemake package, including a dependency update that reflects interconnectedness with the snakedeploy package.

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between dad3d6d and f004eb0.

📒 Files selected for processing (1)

• recipes/snakedeploy/meta.yaml (3 hunks)

🧰 Additional context used

🪛 yamllint

recipes/snakedeploy/meta.yaml

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

🔇 Additional comments (7)

recipes/snakedeploy/meta.yaml (7)

1-1: Version update looks good.

The version has been correctly updated from 0.10.0 to 0.10.1, which aligns with the PR objectives.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

16-16: Build script improvement looks good.

The addition of the --no-cache-dir option to the pip install command is a good practice. This ensures that the package is always installed from the source, preventing potential issues with cached packages during the build process.

---

27-27: Addition of setuptools to run requirements is appropriate.

Including setuptools in the run requirements is a good practice. This ensures that the package has access to setuptools at runtime if needed, which can be important for certain package functionalities.

---

44-44: Summary formatting improvement is good.

The addition of a period at the end of the summary improves its formatting and readability. While this is a minor change, it contributes to the overall quality of the package metadata.

---

47-47: Addition of dev_url is beneficial.

The inclusion of the dev_url pointing to the GitHub repository is a valuable addition. This provides users with easy access to the development repository, which can be helpful for those who want to contribute or stay updated with the latest changes.

---

1-1: Ignore yamllint error for Jinja2 syntax.

The yamllint tool reports a syntax error for the '%' character at the beginning of the file. This is a false positive as the '%' is part of the Jinja2 template syntax commonly used in Conda recipes. The syntax is correct and necessary for defining variables in the recipe.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

9-9: SHA256 checksum update looks good.

The SHA256 checksum has been updated to match the new version 0.10.1. This is correct and necessary for package integrity.

Let's verify that the source URL has been updated correctly:

✅ Verification successful

Further verification needed on the source URL update.

Let's extract the current source URL to ensure it reflects the new version:

---

Further verification needed on the source URL update.

Let's extract all lines containing url to verify the source URL:

---

Verifying the version number in meta.yaml.

Let's ensure that the version is set to 0.10.1:

---

Further verification needed to locate the version definition.

Let's search for all occurrences of version in the recipes/snakedeploy/ directory to identify where it's defined:

---

SHA256 checksum and version update verified.

• The SHA256 checksum matches the new version 0.10.1.
• The version is correctly set to 0.10.1.
• The source URL uses the templated {{ version }}, ensuring it points to the correct version.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify that the source URL has been updated to reflect the new version.

# Test: Check if the URL contains the correct version number
grep -n 'url:.*snakedeploy-0.10.1.tar.gz' recipes/snakedeploy/meta.yaml

Length of output: 73

---

Script:

#!/bin/bash
# Description: Extract the current source URL from meta.yaml.

grep '^url:' recipes/snakedeploy/meta.yaml

Length of output: 44

---

Script:

#!/bin/bash
# Description: Extract all lines containing 'url' from meta.yaml.

grep -i 'url' recipes/snakedeploy/meta.yaml

Length of output: 181

---

Script:

#!/bin/bash
# Description: Extract the version number from meta.yaml.

grep '^version:' recipes/snakedeploy/meta.yaml

Length of output: 48

---

Script:

#!/bin/bash
# Description: Search for all occurrences of 'version' in the recipes/snakedeploy directory.

rg -i 'version' recipes/snakedeploy/

Length of output: 266

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.