recipe formatting #51165
recipe formatting #51165
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WalkthroughThe pull request updates the Possibly related PRs
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🧹 Outside diff range and nitpick comments (1)
recipes/aacon/meta.yaml (1)
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26-38: LGTM: Expanded description with a minor suggestion.The about section has been significantly improved:
- The description now provides detailed information about AACon's functionality and performance.
- The multi-line string format enhances readability.
Consider adding a blank line after the opening
|for better visual separation:description: | AACon is a set of tools implementing 17 different conservation scores ...
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🔇 Additional comments (5)
recipes/aacon/meta.yaml (5)
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1-2: LGTM: Version update and new SHA256 checksum.The version has been correctly updated to "1.1" and a new SHA256 checksum has been provided. These changes are consistent with the package update.
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9-12: LGTM: Build section configuration.The build section is well-configured:
- Build number is correctly set to 0 for the new version.
noarch: genericis appropriate for a Java-based tool.- The addition of
run_exportsis a good practice for version pinning.
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14-16: LGTM: Source URL and checksum updated.The source section has been correctly updated:
- The URL now points to the new version (1.1) of the JAR file.
- The SHA256 checksum has been updated to match the new file.
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18-24: LGTM: Requirements and test sections.The requirements and test sections are correctly configured:
- The OpenJDK >=8 requirement is appropriate for this Java-based tool.
- The test command
aacon --helpremains valid for the new version.
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1-51: Overall LGTM: Successful update of AACon package to version 1.1This update successfully upgrades the AACon package to version 1.1. Key improvements include:
- Version bump from 1.0 to 1.1
- Updated source URL and SHA256 checksum
- Proper build configuration with
noarch: genericandrun_exports- Expanded and more informative package description
These changes enhance the package metadata and should improve user understanding of AACon's capabilities. The update adheres to Conda packaging best practices and Bioconda guidelines.
Some recipe formatting to test new coderabbit settings.
Please read the guidelines for Bioconda recipes before opening a pull request (PR).
General instructions
@BiocondaBot please add labelcommand.@bioconda/corein a comment.Instructions for avoiding API, ABI, and CLI breakage issues
Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify
run_exports(see here for the rationale and comprehensive explanation).Add a
run_exportssection like this:with
...being one of:{{ pin_subpackage("myrecipe", max_pin="x") }}{{ pin_subpackage("myrecipe", max_pin="x.x") }}{{ pin_subpackage("myrecipe", max_pin="x.x") }}(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin="x.x.x") }}(in such a case, please add a note that shortly mentions your evidence for that){{ pin_subpackage("myrecipe", max_pin=None) }}while replacing
"myrecipe"with eithernameif aname|lowervariable is defined in your recipe or with the lowercase name of the package in quotes.Bot commands for PR management
Please use the following BiocondaBot commands:
Everyone has access to the following BiocondaBot commands, which can be given in a comment:
@BiocondaBot please update@BiocondaBot please add labelplease review & mergelabel.@BiocondaBot please fetch artifactsYou can use this to test packages locally.
Note that the
@BiocondaBot please mergecommand is now depreciated. Please just squash and merge instead.Also, the bot watches for comments from non-members that include
@bioconda/<team>and will automatically re-post them to notify the addressed<team>.