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trnascan-se: add aarch64/arm64 build #50996

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merged 3 commits into from
Sep 27, 2024
Merged

trnascan-se: add aarch64/arm64 build #50996

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1cc92b8
trnascan-se: add aarch64/arm64 build
mencian Sep 26, 2024
2ca3cb6
change source URL
mencian Sep 26, 2024
275738e
Merge branch 'master' into trnascan-se
mencian Sep 27, 2024
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3 changes: 3 additions & 0 deletions recipes/trnascan-se/build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,10 @@ export CFLAGS="${CFLAGS} -O3 -I${PREFIX}/include ${LDFLAGS}"

sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' tRNAscan-SE.src
sed -i.bak '1 s|^.*$|#!/usr/bin/env perl|g' src/instman.pl
rm -rf *.bak
rm -rf src/*.bak

autoreconf -if
./configure CC="${CC}" CFLAGS="${CFLAGS}" --prefix="${PREFIX}"

make
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16 changes: 12 additions & 4 deletions recipes/trnascan-se/meta.yaml
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Expand Up @@ -7,7 +7,9 @@ package:
version: {{ version }}

build:
number: 0
number: 1
run_exports:
- {{ pin_subpackage('trnascan-se', max_pin="x") }}

source:
url: http://trna.ucsc.edu/software/trnascan-se-{{ version }}.tar.gz
Expand All @@ -21,6 +23,7 @@ requirements:
- make
- autoconf
- automake
- libtool
host:
- perl
run:
Expand All @@ -32,13 +35,18 @@ test:
- tRNAscan-SE -h

about:
home: "http://lowelab.ucsc.edu/tRNAscan-SE/"
license: GPLv3
home: "https://lowelab.ucsc.edu/tRNAscan-SE/"
license: "GPL-3.0-or-later"
license_family: GPL3
license_file: LICENSE
summary: tRNA detection in large-scale genomic sequences
doc_url: "http://lowelab.ucsc.edu/tRNAscan-SE/help.html"
doc_url: "https://lowelab.ucsc.edu/tRNAscan-SE/help.html"
dev_url: "https://github.com/UCSC-LoweLab/tRNAscan-SE"

extra:
identifiers:
- biotools:trnascan-se
- doi:10.1093/nar/gkab688
additional-platforms:
- linux-aarch64
- osx-arm64
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