Update tiddit to 3.9.0

[BiocondaBot]

Update tiddit: 3.7.0 → 3.9.0

Info	Link or Description
Recipe	recipes/tiddit (click to view/edit other files)
Summary	TIDDIT - structural variant calling.
Home	https://github.com/SciLifeLab/TIDDIT
Releases	https://github.com/SciLifeLab/TIDDIT/tags
Author	@SciLifeLab

---

This pull request was automatically generated (see docs).

[coderabbitai]

📝 Walkthrough

Walkthrough

This pull request involves updates to the meta.yaml file for the tiddit package. The version number has been changed from "3.7.0" to "3.9.0", and the source URL has been updated to direct to the new version's tarball. The SHA256 checksum has also been modified to correspond with the new version's source file. In the requirements section, the joblib dependency has been removed from both the build and run requirements. Additionally, a new field, dev_url, has been introduced in the about section, providing a link to the development repository. The overall structure of the meta.yaml file remains consistent, with no changes made to the build script or other existing fields.

Possibly related PRs

• Update tissuumaps to 3.2.1.10 #51109: Updates the meta.yaml file for the tissuumaps package, including version increments and SHA256 checksum updates.
• Update tissuumaps to 3.2.1.11 #51634: Similar to the main PR, this PR updates the meta.yaml file for the tissuumaps package, reflecting a version change and SHA256 checksum update.
• Update picard to 3.3.0 #51282: Updates the meta.yaml file for the picard package, featuring a version increment and SHA256 checksum update.
• Update ropebwt3 to 3.8 #51482: Changes to the meta.yaml file for the ropebwt3 package include a version increment and SHA256 checksum update.
• Update tirmite to 1.1.5 #51713: Updates the meta.yaml file for the tirmite package, incorporating a version increment and SHA256 checksum update.
• Update tirmite to 1.1.6 #51842: Reflects a version change and SHA256 checksum update in the meta.yaml file for the tirmite package, similar to the main PR.

---

📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Reviewing files that changed from the base of the PR and between c38e38e and 27486ea.

📒 Files selected for processing (1)

• recipes/tiddit/meta.yaml (2 hunks)

🔇 Additional comments (4)

recipes/tiddit/meta.yaml (4)

47-47: LGTM: dev_url addition

The addition of the dev_url field is appropriate and matches the home URL, providing a clear link to the development repository.

---

1-2: ⚠️ Potential issue

Version number inconsistency detected

The PR title and objectives indicate an update to version 3.8.0, but the meta.yaml shows version 3.9.0. This discrepancy needs to be clarified.

Let's verify the latest version:

✅ Verification successful

Version update is correct, PR title needs updating

The version update to 3.9.0 in meta.yaml is correct as it matches the latest release of TIDDIT (TIDDIT-3.9.0). The PR title/objective mentioning 3.8.0 is outdated and should be updated to reflect the latest version.

🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify the latest release version of TIDDIT
# Expected: Clear indication of whether 3.8.0 or 3.9.0 is the correct target version

# Check the latest release tag
gh api repos/SciLifeLab/TIDDIT/releases/latest --jq .tag_name

# List recent releases to see the version sequence
gh api repos/SciLifeLab/TIDDIT/releases --jq '.[].tag_name' | head -n 5

Length of output: 215

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

9-10: Verify SHA256 checksum for the source tarball

The SHA256 checksum has been updated. Let's verify it matches the source tarball.

---

Line range hint 21-33: Verify impact of joblib removal

The joblib dependency has been removed from both build and run requirements. This change needs verification to ensure it doesn't break functionality.

🧰 Tools

🪛 yamllint

[error] 1-1: syntax error: found character '%' that cannot start any token

(syntax)

---

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

• Review comments: Directly reply to a review comment made by CodeRabbit. Example:
  • I pushed a fix in commit <commit_id>, please review it.
  • Generate unit testing code for this file.
  • Open a follow-up GitHub issue for this discussion.
• Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
  • @coderabbitai generate unit testing code for this file.
  • @coderabbitai modularize this function.
• PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
  • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
  • @coderabbitai read src/utils.ts and generate unit testing code.
  • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
  • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

• @coderabbitai pause to pause the reviews on a PR.
• @coderabbitai resume to resume the paused reviews.
• @coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
• @coderabbitai full review to do a full review from scratch and review all the files again.
• @coderabbitai summary to regenerate the summary of the PR.
• @coderabbitai resolve resolve all the CodeRabbit review comments.
• @coderabbitai configuration to show the current CodeRabbit configuration for the repository.
• @coderabbitai help to get help.

Other keywords and placeholders

• Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
• Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
• Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

• You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
• Please see the configuration documentation for more information.
• If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

• Visit our Documentation for detailed information on how to use CodeRabbit.
• Join our Discord Community to get help, request features, and share feedback.
• Follow us on X/Twitter for updates and announcements.