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Update HiCUP (dependencies and test) #36872

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merged 8 commits into from
Sep 21, 2022

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lldelisle
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I realized that running the test dataset with the current build was failing because since version 8 HiCUP uses rmarkdown to generate the report.


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@lldelisle
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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Sep 9, 2022
@lldelisle
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I don't know if it was the good way to do:
If I do not specify the version of r-stringi, it is using the build from default: 1.7.6-r42h884c59f_0 I tried to prevent using this version (3b01568) but it still used it... Then I forced a version I knew was working locally...

@dpryan79
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@BiocondaBot please fetch artifacts

@lldelisle
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I think the CI is too old, it has been deleted, you may need to rerun the CI...

@dpryan79
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@BiocondaBot please merge

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Sorry, this PR cannot be merged until it's approved by a Bioconda member.

@dpryan79
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@BiocondaBot please fetch artifacts, which is what I meant last time.

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Package(s) built on Azure are ready for inspection:

Arch Package Zip File
noarch hicup-0.8.3-hdfd78af_1.tar.bz2 LinuxArtifacts

You may also use conda to install these after downloading and extracting the appropriate zip file. From the LinuxArtifacts or OSXArtifacts directories:

conda install -c packages <package name>

Docker image(s) built (images are in the LinuxArtifacts zip file above):

Package Tag Install with docker
hicup 0.8.3--hdfd78af_1
showgzip -dc LinuxArtifacts/images/hicup:0.8.3--hdfd78af_1.tar.gz | docker load

@dpryan79
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@BiocondaBot please merge

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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

@BiocondaBot BiocondaBot merged commit c2a448c into bioconda:master Sep 21, 2022
@lldelisle lldelisle deleted the update_hicup_dep branch September 21, 2022 09:14
@lldelisle
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Thank you so much @dpryan79

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3 participants