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[Do Not Merge] Add recipe for GitHub-only R package ArchR #36855

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The R package ArchR is not yet on CRAN or Bioconductor. Also, the README clearly states that it is still in Beta. Thus I am hesitant to add it to bioconda until it is more stable. On the other hand, the accompanying publication was officially published over a year ago (Feb 2021), and is clearly being heavily used by the single-cell community (already cited over 250 times!).

Thus at minimum I would like to build and upload the conda binaries to my personal Anaconda channel to facilitate reproducible installation in bioinformatics pipelines. I know trying to maintain GitHub-only R packages in addition to the thousands of others in bioconda/conda-forge is a pain, so I'll leave it to others decide if they want to officially maintain an ArchR recipe in bioconda.


Please read the guidelines for Bioconda recipes before opening a pull request (PR).

  • If this PR adds or updates a recipe, use "Add" or "Update" appropriately as the first word in its title.
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@jdblischak
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@BiocondaBot please fetch artifacts

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Package(s) built on Azure are ready for inspection:

Arch Package Zip File
linux-64 r-archr-1.0.2-r41h87f3376_0.tar.bz2 LinuxArtifacts
osx-64 r-archr-1.0.2-r41h9722bc1_0.tar.bz2 OSXArtifacts

You may also use conda to install these after downloading and extracting the appropriate zip file. From the LinuxArtifacts or OSXArtifacts directories:

conda install -c packages <package name>

Docker image(s) built (images are in the LinuxArtifacts zip file above):

Package Tag Install with docker
r-archr 1.0.2--r41h87f3376_0
showgzip -dc LinuxArtifacts/images/r-archr:1.0.2--r41h87f3376_0.tar.gz | docker load

@jdblischak
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Packages now available from my channel jdblischak. To install, you can run something like the following:

mamba create -n test-archr -c conda-forge -c bioconda -c jdblischak r-archr

@jdblischak jdblischak closed this Sep 8, 2022
@mfansler mfansler mentioned this pull request Oct 10, 2024
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