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Update pgcgap to v1.0.18 #22707

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merged 20 commits into from
Jun 19, 2020
Merged

Update pgcgap to v1.0.18 #22707

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9173e4c
Merge pull request #1 from bioconda/master
Oct 23, 2019
3d93fb3
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
Oct 23, 2019
6dc4f59
Merge pull request #3 from bioconda/master
Dec 2, 2019
75fd768
Merge pull request #5 from bioconda/master
Jan 18, 2020
5eb3e58
Merge pull request #7 from bioconda/master
Feb 28, 2020
006c84d
Merge pull request #9 from bioconda/master
Mar 21, 2020
281a8f5
Merge pull request #14 from bioconda/master
Apr 24, 2020
fbbc766
Merge pull request #16 from bioconda/master
Jun 15, 2020
dd1c9b9
Update pgcgap to v1.0.18
Jun 16, 2020
c9db418
Update meta.yaml
dpryan79 Jun 16, 2020
44c64cb
Debug why there are python host dependencies getting pulled in
dpryan79 Jun 16, 2020
ab695e1
Update meta.yaml
dpryan79 Jun 17, 2020
aa19180
Update meta.yaml
dpryan79 Jun 17, 2020
8641bb9
Update meta.yaml
dpryan79 Jun 17, 2020
f00f3a8
Update meta.yaml
dpryan79 Jun 18, 2020
97e5cda
Merge branch 'master' of https://github.com/bioconda/bioconda-recipes
BiocondaBot Jun 18, 2020
c05a0aa
Merge branch 'master' into pgcgap
BiocondaBot Jun 18, 2020
4585f25
Update meta.yaml
dpryan79 Jun 19, 2020
3ad8e78
Update meta.yaml
dpryan79 Jun 19, 2020
a94acbf
Update meta.yaml
dpryan79 Jun 19, 2020
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12 changes: 7 additions & 5 deletions recipes/pgcgap/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,13 +1,13 @@
{% set name = "pgcgap" %}
{% set version = "1.0.17" %}
{% set version = "1.0.18" %}

package:
name: '{{ name }}'
version: '{{ version }}'

source:
url: https://github.com/liaochenlanruo/pgcgap/archive/v{{ version }}.tar.gz
sha256: b4a57daed31ce3cd781e3f4687bb5a896b01bb83172ab844edac9ad9f34e3947
sha256: d70c59635da62ef3ba57d7b0f1e07ca3be67388aa6c16930104714e5adac6ff0

build:
number: 0
Expand All @@ -19,7 +19,6 @@ requirements:
- perl-bioperl >=1.7.2
- perl-file-tee
- perl-sys-info

run:
- abricate
- canu >=1.8
Expand All @@ -46,6 +45,7 @@ requirements:
- fastani >=1.1
- fastp
- pal2nal
- perl
- perl-file-tee
- perl-data-dumper >=2.173
- perl-pod-usage >=1.69
Expand All @@ -56,9 +56,11 @@ requirements:
- htslib >=1.9
- snippy >=4.3.6
- sickle-trim >=1.33
- r-ggplot2 =3.1.1
- r-base
- r-ggplot2 >=3.1.1
- r-gplots
- r-corrplot
- python
- matplotlib-base
- scoary
- seaborn
Expand All @@ -67,7 +69,7 @@ requirements:
- biopython
- r-pheatmap
- r-plotrix
- unicycler =0.4.7
- unicycler 0.4.7
- wget
- coreutils

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