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Update plastid to 0.5.1 #22331

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merged 4 commits into from
May 27, 2020
Merged

Update plastid to 0.5.1 #22331

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2254953
Update plastid to 0.4.9dev for testing build
lparsons Jun 21, 2019
c1d9f41
Update plastid to 0.5.1
lparsons May 26, 2020
6bf85c5
Update plastid to 0.5.1, removed from blacklist
lparsons May 26, 2020
2ce9b4a
Update plastid to 0.5.1, added cython to run requirements
lparsons May 26, 2020
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1 change: 0 additions & 1 deletion build-fail-blacklist
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Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,6 @@ recipes/qtip
recipes/tagger
recipes/compare-reads
recipes/strainest
recipes/plastid
recipes/r-peer
recipes/methylpy
recipes/openslide-python
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21 changes: 9 additions & 12 deletions recipes/plastid/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,21 +1,19 @@
{% set name = "plastid" %}
{% set version = "0.4.8" %}
{% set version = "0.5.1" %}

package:
name: {{ name }}
version: {{ version }}

source:
url: https://files.pythonhosted.org/packages/source/p/{{ name }}/{{ name }}-{{ version }}.tar.gz
sha256: 48c23e07d116417347c335861a8f65cad8921ed0a40a02a4472e1a83476b4450
patches:
- 0001-Simplify-get_short_name-regex.patch # Patch submitted upstream https://github.com/joshuagryphon/plastid/pull/30
sha256: d4e32b7ccdeaa3d2ff907469731b54690034f145c5854211f202f02efc6cf5a8
build:
number: 6
number: 0

extra:
skip-lints:
- deprecated_numpy_spec # Later numpy causes issue: https://github.com/joshuagryphon/plastid/issues/18, remove skip-lint when fix released
- cython_must_be_in_host # Plastid mistakenly checks for Cython at runtime (pkg_resources.DistributionNotFound)

requirements:
build:
Expand All @@ -24,23 +22,24 @@ requirements:
- python
- cython >=0.22.0
- setuptools
- numpy >=1.9.0,<1.12.0 # Later numpy causes issue: https://github.com/joshuagryphon/plastid/issues/18, remove restriction when fix released
- numpy >=1.9.4
- pysam >=0.8.4
- termcolor
- scipy >=0.15.1
- pandas >=0.17.0
- matplotlib >=1.4.0
- matplotlib-base >=1.4.0
- biopython >=1.64
- twobitreader >=3.0.0
- zlib
run:
- python
- {{ pin_compatible('numpy', max_pin='x.x') }} # Later numpy causes issue: https://github.com/joshuagryphon/plastid/issues/18, remove max_pin when fix released
- {{ pin_compatible('numpy') }}
- {{ pin_compatible('pysam', max_pin='x.x.x') }}
- cython >=0.22.0
- termcolor
- scipy >=0.15.1
- pandas >=0.17.0
- matplotlib >=1.4.0
- matplotlib-base >=1.4.0
- biopython >=1.64
- twobitreader >=3.0.0
- zlib
Expand All @@ -63,8 +62,6 @@ test:
- reformat_transcripts -h
- findjuncs -h
- slidejuncs -h
# Later numpy causes issue: https://github.com/joshuagryphon/plastid/issues/18, remove this test when fix released
- python -c "exec(\"import numpy\ncounts = numpy.array([1,2,3])\ncounts.reshape((len(counts)/3,3))\")"

about:
home: http://plastid.readthedocs.io/en/latest/
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